Pseudogenes regulate parental gene expression via ce RNA network

• Published in: Journal of cellular and molecular medicine 2017-01, Vol.21 (1), p.185-192
• Main Authors: An, Yang, Furber, Kendra L., Ji, Shaoping
• Format: Article
• Language: English
• Subjects: Cancer; Circular RNA; Competition; Deoxyribonucleic acid; DNA; DNA methylation; Epigenetics; Evolution; Gene expression; Genomes; MicroRNAs; miRNA; mRNA stability; Mutation; Proteins; Pseudogenes; Regulatory sequences; Roles; rRNA; tRNA
• ISSN: 1582-1838; 1582-4934
• DOI: 10.1111/jcmm.12952

The concept of competitive endogenous RNA (ce RNA ) was first proposed by Salmena and colleagues. Evidence suggests that pseudogene RNA s can act as a ‘sponge’ through competitive binding of common mi RNA , releasing or attenuating repression through sequestering mi RNA s away from parental mRNA . In theory, ce RNA s refer to all transcripts such as mRNA , tRNA , rRNA , long non‐coding RNA , pseudogene RNA and circular RNA , because all of them may become the targets of mi RNA depending on spatiotemporal situation. As binding of mi RNA to the target RNA is not 100% complementary, it is possible that one mi RNA can bind to multiple target RNA s and vice versa. All RNA s crosstalk through competitively binding to mi RNA via mi RNA response elements ( MRE s) contained within the RNA sequences, thus forming a complex regulatory network. The ratio of a subset of mi RNA s to the corresponding number of MRE s determines repression strength on a given mRNA translation or stability. An increase in pseudogene RNA level can sequester mi RNA and release repression on the parental gene, leading to an increase in parental gene expression. A massive number of transcripts constitute a complicated network that regulates each other through this proposed mechanism, though some regulatory significance may be mild or even undetectable. It is possible that the regulation of gene and pseudogene expression occurring in this manor involves all RNA s bearing common MRE s. In this review, we will primarily discuss how pseudogene transcripts regulate expression of parental genes via ce RNA network and biological significance of regulation.