Using SNP/INDEL diversity patterns to identify a core group of genotypes from FVC11, a superior hybrid family of Fragaria virginiana Miller and F. chiloensis (L.) Miller

A diverse strawberry family (FVC11) was created by intercrossing elite native clones of the progenitor species of F . ×  ananassa Duchesne in Lamarck [ F . virginiana Miller ×  F . chiloensis (L.) Miller]. The impressive performance of FVC11 led us to identify a core subset within the family for con...

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Published in:Genetic resources and crop evolution 2019-12, Vol.66 (8), p.1691-1698
Main Authors: Sooriyapathirana, S. D. S. S., Ranaweera, L. T., Perera, H. A. C. R., Weebadde, C. K., Finn, C. E., Bassil, N. V., Hancock, J. F.
Format: Article
Language:English
Subjects:
Agriculture
Biomedical and Life Sciences
Breeding
Fragaria chiloensis
Genetic diversity
Genomes
Genotypes
Indigenous species
Life Sciences
Plant Genetics and Genomics
Plant Physiology
Plant Sciences
Plant Systematics/Taxonomy/Biogeography
Research Article
Single-nucleotide polymorphism
Strawberries
Subgroups
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cited_by cdi_FETCH-LOGICAL-c319t-ae2d1ed2c4218c35c72c9914e7fd15fbec3f48228ad3f36cf40e328b59c17eb3
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container_end_page 1698
container_issue 8
container_start_page 1691
container_title Genetic resources and crop evolution
container_volume 66
creator Sooriyapathirana, S. D. S. S.
Ranaweera, L. T.
Perera, H. A. C. R.
Weebadde, C. K.
Finn, C. E.
Bassil, N. V.
Hancock, J. F.
description A diverse strawberry family (FVC11) was created by intercrossing elite native clones of the progenitor species of F . ×  ananassa Duchesne in Lamarck [ F . virginiana Miller ×  F . chiloensis (L.) Miller]. The impressive performance of FVC11 led us to identify a core subset within the family for conservation and breeding purposes. Cluster procedures were conducted on the phenotypic data of 16 traits and 29,251 SNP data generated using the genome wide SNP array, Affymetrix Axiom IStraw90 TW . To select a core group, the best performing individuals were identified in each of the major clades shown in the phenographs derived from the genotypic and phenotypic data. A subgroup of 10 individuals was selected that represents most of the genetic diversity in FVC11.
doi_str_mv 10.1007/s10722-019-00819-0
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1573-5109
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subjects Agriculture
Biomedical and Life Sciences
Breeding
Fragaria chiloensis
Genetic diversity
Genomes
Genotypes
Indigenous species
Life Sciences
Plant Genetics and Genomics
Plant Physiology
Plant Sciences
Plant Systematics/Taxonomy/Biogeography
Research Article
Single-nucleotide polymorphism
Strawberries
Subgroups
title Using SNP/INDEL diversity patterns to identify a core group of genotypes from FVC11, a superior hybrid family of Fragaria virginiana Miller and F. chiloensis (L.) Miller
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