Loading…
A Model Simulation of the Adaptive Evolution through Mutation of the Coccolithophore Emiliania huxleyi Based on a Published Laboratory Study
We expect the structure and functioning of marine ecosystems to change over this century in response to changes in key ocean variables associated with a changing climate. Organisms with generation times from years to decades have the capacity to adapt to changing environmental conditions over a few...
Saved in:
Published in: | Frontiers in Marine Science 2017-01, Vol.3 |
---|---|
Main Author: | |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites Items that cite this one |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | cdi_FETCH-LOGICAL-c313t-62d906e5c1a070a53c7efcfd77967ec31f9afed53af254da50e1967810932f03 |
---|---|
cites | cdi_FETCH-LOGICAL-c313t-62d906e5c1a070a53c7efcfd77967ec31f9afed53af254da50e1967810932f03 |
container_end_page | |
container_issue | |
container_start_page | |
container_title | Frontiers in Marine Science |
container_volume | 3 |
creator | Denman, Kenneth L. |
description | We expect the structure and functioning of marine ecosystems to change over this century in response to changes in key ocean variables associated with a changing climate. Organisms with generation times from years to decades have the capacity to adapt to changing environmental conditions over a few generations by selecting from existing genotypes/phenotypes, but it is unlikely that evolution through mutation will be a major factor for organisms with generation times of years to decades. However, phytoplankton and other microbes, with generation times of days or less, experience hundreds of generations each year, allowing the possibility for favorable mutations (i.e., those that produce organisms with fitness maxima nearer to the environmental conditions at that time) to dominate existing genotypes and survive in a changing climate. Several laboratories have grown phytoplankton cultures for hundreds to thousands of generations and demonstrated that they have changed genetic makeup. In particular Schlüter et al (2014) grew replicates derived from a single cell of Emiliania huxleyi, a coccolithophorid with broad geographical and thermal range, for 3 years (~1250 generations) at 15°C, and then for a year at 26.3°C, near their upper thermal limit. During the last year the intrinsic growth rate increased more or less linearly, which the authors attribute to genetic mutation. Here we simulate genetic mutation of a single trait (intrinsic growth rate), both for the control phase and the warm phase of their study. We consider sensitivities to frequency of mutation, changes with temperature in intrinsic growth rate, and use the experimental setup and results to place constraints on the way mutations occur. In particular, all numerical experiments with mutation result in a lag time ~30-140 generations before a significant increase in realized growth rate occurs. This lag after a favorable mutation results from the number of generations required for a single favorable mutant cell to reach a significant fraction of the ~105 cells in the culture. A numerical experiment that includes a simple plastic response formulation shows that plasticity could remove this lag and yield results more in agreement with those observed in the laboratory study. |
doi_str_mv | 10.3389/fmars.2016.00286 |
format | article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2307439689</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2307439689</sourcerecordid><originalsourceid>FETCH-LOGICAL-c313t-62d906e5c1a070a53c7efcfd77967ec31f9afed53af254da50e1967810932f03</originalsourceid><addsrcrecordid>eNpVkE1LAzEQhoMoWLR3jwHPW2c3-5VjLfUDWhTae0g3iZuybdZ8FPc_-KNNWw96mhneZ2bgQeguhQkhNX1QO27dJIO0nABkdXmBRllGy6Sq8uLyT3-Nxs5tASAlORQ5HaHvKV4aITu80rvQca_NHhuFfSvxVPDe64PE84PpwinxrTXho8XL4P-hM9M0ptO-NX1rbNzY6U7zvea4DV-dHDR-5E4KHDc4fg-bTrs2jgu-MZZ7Ywe88kEMt-hK8c7J8W-9Qeun-Xr2kizenl9n00XSkJT4pMwEhVIWTcqhAl6QppKqUaKqaFnJyCjKlRQF4SorcsELkGlM6hQoyRSQG3R_Pttb8xmk82xrgt3HjywjUOWEljWNFJypxhrnrFSstzp6HlgK7Gidnayzo3V2sk5-AJNFeHQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2307439689</pqid></control><display><type>article</type><title>A Model Simulation of the Adaptive Evolution through Mutation of the Coccolithophore Emiliania huxleyi Based on a Published Laboratory Study</title><source>Publicly Available Content Database</source><creator>Denman, Kenneth L.</creator><creatorcontrib>Denman, Kenneth L.</creatorcontrib><description>We expect the structure and functioning of marine ecosystems to change over this century in response to changes in key ocean variables associated with a changing climate. Organisms with generation times from years to decades have the capacity to adapt to changing environmental conditions over a few generations by selecting from existing genotypes/phenotypes, but it is unlikely that evolution through mutation will be a major factor for organisms with generation times of years to decades. However, phytoplankton and other microbes, with generation times of days or less, experience hundreds of generations each year, allowing the possibility for favorable mutations (i.e., those that produce organisms with fitness maxima nearer to the environmental conditions at that time) to dominate existing genotypes and survive in a changing climate. Several laboratories have grown phytoplankton cultures for hundreds to thousands of generations and demonstrated that they have changed genetic makeup. In particular Schlüter et al (2014) grew replicates derived from a single cell of Emiliania huxleyi, a coccolithophorid with broad geographical and thermal range, for 3 years (~1250 generations) at 15°C, and then for a year at 26.3°C, near their upper thermal limit. During the last year the intrinsic growth rate increased more or less linearly, which the authors attribute to genetic mutation. Here we simulate genetic mutation of a single trait (intrinsic growth rate), both for the control phase and the warm phase of their study. We consider sensitivities to frequency of mutation, changes with temperature in intrinsic growth rate, and use the experimental setup and results to place constraints on the way mutations occur. In particular, all numerical experiments with mutation result in a lag time ~30-140 generations before a significant increase in realized growth rate occurs. This lag after a favorable mutation results from the number of generations required for a single favorable mutant cell to reach a significant fraction of the ~105 cells in the culture. A numerical experiment that includes a simple plastic response formulation shows that plasticity could remove this lag and yield results more in agreement with those observed in the laboratory study.</description><identifier>ISSN: 2296-7745</identifier><identifier>EISSN: 2296-7745</identifier><identifier>DOI: 10.3389/fmars.2016.00286</identifier><language>eng</language><publisher>Lausanne: Frontiers Research Foundation</publisher><subject>Acidification ; Adaptation ; Cell culture ; Climate ; Climate change ; Ecosystems ; Emiliania huxleyi ; Environmental changes ; Environmental conditions ; Evolution ; Evolution & development ; Genotype & phenotype ; Genotypes ; Growth rate ; Laboratories ; Marine ecosystems ; Mutation ; Phenotypes ; Phytoplankton ; Plankton ; Plasticity ; Survival</subject><ispartof>Frontiers in Marine Science, 2017-01, Vol.3</ispartof><rights>2017. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c313t-62d906e5c1a070a53c7efcfd77967ec31f9afed53af254da50e1967810932f03</citedby><cites>FETCH-LOGICAL-c313t-62d906e5c1a070a53c7efcfd77967ec31f9afed53af254da50e1967810932f03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2307439689/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2307439689?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,25753,27924,27925,37012,44590,75126</link.rule.ids></links><search><creatorcontrib>Denman, Kenneth L.</creatorcontrib><title>A Model Simulation of the Adaptive Evolution through Mutation of the Coccolithophore Emiliania huxleyi Based on a Published Laboratory Study</title><title>Frontiers in Marine Science</title><description>We expect the structure and functioning of marine ecosystems to change over this century in response to changes in key ocean variables associated with a changing climate. Organisms with generation times from years to decades have the capacity to adapt to changing environmental conditions over a few generations by selecting from existing genotypes/phenotypes, but it is unlikely that evolution through mutation will be a major factor for organisms with generation times of years to decades. However, phytoplankton and other microbes, with generation times of days or less, experience hundreds of generations each year, allowing the possibility for favorable mutations (i.e., those that produce organisms with fitness maxima nearer to the environmental conditions at that time) to dominate existing genotypes and survive in a changing climate. Several laboratories have grown phytoplankton cultures for hundreds to thousands of generations and demonstrated that they have changed genetic makeup. In particular Schlüter et al (2014) grew replicates derived from a single cell of Emiliania huxleyi, a coccolithophorid with broad geographical and thermal range, for 3 years (~1250 generations) at 15°C, and then for a year at 26.3°C, near their upper thermal limit. During the last year the intrinsic growth rate increased more or less linearly, which the authors attribute to genetic mutation. Here we simulate genetic mutation of a single trait (intrinsic growth rate), both for the control phase and the warm phase of their study. We consider sensitivities to frequency of mutation, changes with temperature in intrinsic growth rate, and use the experimental setup and results to place constraints on the way mutations occur. In particular, all numerical experiments with mutation result in a lag time ~30-140 generations before a significant increase in realized growth rate occurs. This lag after a favorable mutation results from the number of generations required for a single favorable mutant cell to reach a significant fraction of the ~105 cells in the culture. A numerical experiment that includes a simple plastic response formulation shows that plasticity could remove this lag and yield results more in agreement with those observed in the laboratory study.</description><subject>Acidification</subject><subject>Adaptation</subject><subject>Cell culture</subject><subject>Climate</subject><subject>Climate change</subject><subject>Ecosystems</subject><subject>Emiliania huxleyi</subject><subject>Environmental changes</subject><subject>Environmental conditions</subject><subject>Evolution</subject><subject>Evolution & development</subject><subject>Genotype & phenotype</subject><subject>Genotypes</subject><subject>Growth rate</subject><subject>Laboratories</subject><subject>Marine ecosystems</subject><subject>Mutation</subject><subject>Phenotypes</subject><subject>Phytoplankton</subject><subject>Plankton</subject><subject>Plasticity</subject><subject>Survival</subject><issn>2296-7745</issn><issn>2296-7745</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNpVkE1LAzEQhoMoWLR3jwHPW2c3-5VjLfUDWhTae0g3iZuybdZ8FPc_-KNNWw96mhneZ2bgQeguhQkhNX1QO27dJIO0nABkdXmBRllGy6Sq8uLyT3-Nxs5tASAlORQ5HaHvKV4aITu80rvQca_NHhuFfSvxVPDe64PE84PpwinxrTXho8XL4P-hM9M0ptO-NX1rbNzY6U7zvea4DV-dHDR-5E4KHDc4fg-bTrs2jgu-MZZ7Ywe88kEMt-hK8c7J8W-9Qeun-Xr2kizenl9n00XSkJT4pMwEhVIWTcqhAl6QppKqUaKqaFnJyCjKlRQF4SorcsELkGlM6hQoyRSQG3R_Pttb8xmk82xrgt3HjywjUOWEljWNFJypxhrnrFSstzp6HlgK7Gidnayzo3V2sk5-AJNFeHQ</recordid><startdate>20170111</startdate><enddate>20170111</enddate><creator>Denman, Kenneth L.</creator><general>Frontiers Research Foundation</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TN</scope><scope>7XB</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M2P</scope><scope>M7P</scope><scope>PCBAR</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope></search><sort><creationdate>20170111</creationdate><title>A Model Simulation of the Adaptive Evolution through Mutation of the Coccolithophore Emiliania huxleyi Based on a Published Laboratory Study</title><author>Denman, Kenneth L.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c313t-62d906e5c1a070a53c7efcfd77967ec31f9afed53af254da50e1967810932f03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Acidification</topic><topic>Adaptation</topic><topic>Cell culture</topic><topic>Climate</topic><topic>Climate change</topic><topic>Ecosystems</topic><topic>Emiliania huxleyi</topic><topic>Environmental changes</topic><topic>Environmental conditions</topic><topic>Evolution</topic><topic>Evolution & development</topic><topic>Genotype & phenotype</topic><topic>Genotypes</topic><topic>Growth rate</topic><topic>Laboratories</topic><topic>Marine ecosystems</topic><topic>Mutation</topic><topic>Phenotypes</topic><topic>Phytoplankton</topic><topic>Plankton</topic><topic>Plasticity</topic><topic>Survival</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Denman, Kenneth L.</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Oceanic Abstracts</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Earth, Atmospheric & Aquatic Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Science Database</collection><collection>ProQuest Biological Science Journals</collection><collection>Earth, Atmospheric & Aquatic Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><jtitle>Frontiers in Marine Science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Denman, Kenneth L.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Model Simulation of the Adaptive Evolution through Mutation of the Coccolithophore Emiliania huxleyi Based on a Published Laboratory Study</atitle><jtitle>Frontiers in Marine Science</jtitle><date>2017-01-11</date><risdate>2017</risdate><volume>3</volume><issn>2296-7745</issn><eissn>2296-7745</eissn><abstract>We expect the structure and functioning of marine ecosystems to change over this century in response to changes in key ocean variables associated with a changing climate. Organisms with generation times from years to decades have the capacity to adapt to changing environmental conditions over a few generations by selecting from existing genotypes/phenotypes, but it is unlikely that evolution through mutation will be a major factor for organisms with generation times of years to decades. However, phytoplankton and other microbes, with generation times of days or less, experience hundreds of generations each year, allowing the possibility for favorable mutations (i.e., those that produce organisms with fitness maxima nearer to the environmental conditions at that time) to dominate existing genotypes and survive in a changing climate. Several laboratories have grown phytoplankton cultures for hundreds to thousands of generations and demonstrated that they have changed genetic makeup. In particular Schlüter et al (2014) grew replicates derived from a single cell of Emiliania huxleyi, a coccolithophorid with broad geographical and thermal range, for 3 years (~1250 generations) at 15°C, and then for a year at 26.3°C, near their upper thermal limit. During the last year the intrinsic growth rate increased more or less linearly, which the authors attribute to genetic mutation. Here we simulate genetic mutation of a single trait (intrinsic growth rate), both for the control phase and the warm phase of their study. We consider sensitivities to frequency of mutation, changes with temperature in intrinsic growth rate, and use the experimental setup and results to place constraints on the way mutations occur. In particular, all numerical experiments with mutation result in a lag time ~30-140 generations before a significant increase in realized growth rate occurs. This lag after a favorable mutation results from the number of generations required for a single favorable mutant cell to reach a significant fraction of the ~105 cells in the culture. A numerical experiment that includes a simple plastic response formulation shows that plasticity could remove this lag and yield results more in agreement with those observed in the laboratory study.</abstract><cop>Lausanne</cop><pub>Frontiers Research Foundation</pub><doi>10.3389/fmars.2016.00286</doi><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2296-7745 |
ispartof | Frontiers in Marine Science, 2017-01, Vol.3 |
issn | 2296-7745 2296-7745 |
language | eng |
recordid | cdi_proquest_journals_2307439689 |
source | Publicly Available Content Database |
subjects | Acidification Adaptation Cell culture Climate Climate change Ecosystems Emiliania huxleyi Environmental changes Environmental conditions Evolution Evolution & development Genotype & phenotype Genotypes Growth rate Laboratories Marine ecosystems Mutation Phenotypes Phytoplankton Plankton Plasticity Survival |
title | A Model Simulation of the Adaptive Evolution through Mutation of the Coccolithophore Emiliania huxleyi Based on a Published Laboratory Study |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-01T11%3A23%3A42IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20Model%20Simulation%20of%20the%20Adaptive%20Evolution%20through%20Mutation%20of%20the%20Coccolithophore%20Emiliania%20huxleyi%20Based%20on%20a%20Published%20Laboratory%20Study&rft.jtitle=Frontiers%20in%20Marine%20Science&rft.au=Denman,%20Kenneth%20L.&rft.date=2017-01-11&rft.volume=3&rft.issn=2296-7745&rft.eissn=2296-7745&rft_id=info:doi/10.3389/fmars.2016.00286&rft_dat=%3Cproquest_cross%3E2307439689%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c313t-62d906e5c1a070a53c7efcfd77967ec31f9afed53af254da50e1967810932f03%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2307439689&rft_id=info:pmid/&rfr_iscdi=true |