complete chloroplast genome sequence of the Purple Feathergrass Stipa purpurea (Poales: Poaceae)

The complete chloroplast genome of the Purple Feathergrass Stipa purpurea (Poales: Poaceae: Stipeae) has been assembled from the whole-genome Illumina sequencing data. The circular genome is 137,370 bp in size, and comprises a pair of inverted repeat regions of 21,663 bp each, a large single-copy...

Full description

Saved in:
Bibliographic Details
Published in:Conservation genetics resources 2016-06, Vol.8 (2), p.101-104
Main Authors: Lu, Dengxue, Yuhui Zhao, Rongbin Han, Long Wang, Peng Qin
Format: Article
Language:English
Subjects:
Ampelodesmos mauritanicus
Animal Genetics and Genomics
Base composition
Biodiversity
Biomedical and Life Sciences
chloroplast genome
Chloroplasts
Conservation Biology/Ecology
Ecology
Evolutionary Biology
genes
Genomes
hybrids
Inverted repeat
Life Sciences
Nucleotide sequence
nucleotide sequences
parents
Phylogeny
Plant Genetics and Genomics
Poaceae
Poales
ribosomal RNA
rRNA
Species
Stipa
Stipa purpurea
Technical Note
Transfer RNA
tRNA
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c340t-1ffc92d2e382717965b8191ad0d4dc29d9754d8f1c4f2a253936d4cc36a175e63
cites cdi_FETCH-LOGICAL-c340t-1ffc92d2e382717965b8191ad0d4dc29d9754d8f1c4f2a253936d4cc36a175e63
container_end_page 104
container_issue 2
container_start_page 101
container_title Conservation genetics resources
container_volume 8
creator Lu, Dengxue
Yuhui Zhao
Rongbin Han
Long Wang
Peng Qin
description The complete chloroplast genome of the Purple Feathergrass Stipa purpurea (Poales: Poaceae: Stipeae) has been assembled from the whole-genome Illumina sequencing data. The circular genome is 137,370 bp in size, and comprises a pair of inverted repeat regions of 21,663 bp each, a large single-copy region of 81,202 bp and a small single-copy region of 12,842 bp. It harbors 130 genes, including 84 protein-coding genes (78 PCG species), eight ribosomal RNA genes (four rRNA species) and 38 transfer RNA genes (30 tRNA species). The base composition is asymmetric (30.7 % A, 19.3 % C, 19.5 % G, 30.5 % T) with an overall A+T content of 61.2 %. Phylogenetic analysis indicated that S. purpurea is more phylogenetically related to its contribal counterparts than to those from other tribes, except for the case of Ampelodesmos mauritanicus (tribe Ampelodesmeae) probably due to its identity as an ancient hybrid between parents from Stipeae and Phaenospermateae.
doi_str_mv 10.1007/s12686-016-0519-x
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2406973020</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2406973020</sourcerecordid><originalsourceid>FETCH-LOGICAL-c340t-1ffc92d2e382717965b8191ad0d4dc29d9754d8f1c4f2a253936d4cc36a175e63</originalsourceid><addsrcrecordid>eNp9kE1LAzEQhoMoWKs_wJMBL3pYzcdusvEmxapQsFB7jjE72Va2zZrsQv33pqzozcMwM8zzzgwvQueU3FBC5G2kTJQiIzRFQVW2O0AjWkqZSSbI4W9dsGN0EuMHIaLkjI3Qm_WbtoEOsF01Pvi2MbHDNWz9BnCEzx62FrB3uFsBnvchsXgKJnWhDiZGvOjWrcFtmvQBDL6ae9NAvMMpWzBwfYqOnGkinP3kMVpOH14nT9ns5fF5cj_LLM9Jl1HnrGIVA14ySaUSxXtJFTUVqfLKMlUpWeRV6ajNHTOs4IqLKreWC0NlAYKP0eWwtw0-fR07_eH7sE0nNcuJUJITRhJFB8oGH2MAp9uw3pjwpSnReyP1YKRORuq9kXqXNGzQxMRuawh_m_8TXQwiZ7w2dVhHvVywBBBCS1pwzr8BMlR_sQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2406973020</pqid></control><display><type>article</type><title>complete chloroplast genome sequence of the Purple Feathergrass Stipa purpurea (Poales: Poaceae)</title><source>Springer Nature</source><creator>Lu, Dengxue ; Yuhui Zhao ; Rongbin Han ; Long Wang ; Peng Qin</creator><creatorcontrib>Lu, Dengxue ; Yuhui Zhao ; Rongbin Han ; Long Wang ; Peng Qin</creatorcontrib><description>The complete chloroplast genome of the Purple Feathergrass Stipa purpurea (Poales: Poaceae: Stipeae) has been assembled from the whole-genome Illumina sequencing data. The circular genome is 137,370 bp in size, and comprises a pair of inverted repeat regions of 21,663 bp each, a large single-copy region of 81,202 bp and a small single-copy region of 12,842 bp. It harbors 130 genes, including 84 protein-coding genes (78 PCG species), eight ribosomal RNA genes (four rRNA species) and 38 transfer RNA genes (30 tRNA species). The base composition is asymmetric (30.7 % A, 19.3 % C, 19.5 % G, 30.5 % T) with an overall A+T content of 61.2 %. Phylogenetic analysis indicated that S. purpurea is more phylogenetically related to its contribal counterparts than to those from other tribes, except for the case of Ampelodesmos mauritanicus (tribe Ampelodesmeae) probably due to its identity as an ancient hybrid between parents from Stipeae and Phaenospermateae.</description><identifier>ISSN: 1877-7252</identifier><identifier>EISSN: 1877-7260</identifier><identifier>DOI: 10.1007/s12686-016-0519-x</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Ampelodesmos mauritanicus ; Animal Genetics and Genomics ; Base composition ; Biodiversity ; Biomedical and Life Sciences ; chloroplast genome ; Chloroplasts ; Conservation Biology/Ecology ; Ecology ; Evolutionary Biology ; genes ; Genomes ; hybrids ; Inverted repeat ; Life Sciences ; Nucleotide sequence ; nucleotide sequences ; parents ; Phylogeny ; Plant Genetics and Genomics ; Poaceae ; Poales ; ribosomal RNA ; rRNA ; Species ; Stipa ; Stipa purpurea ; Technical Note ; Transfer RNA ; tRNA</subject><ispartof>Conservation genetics resources, 2016-06, Vol.8 (2), p.101-104</ispartof><rights>Springer Science+Business Media Dordrecht 2016</rights><rights>Springer Science+Business Media Dordrecht 2016.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c340t-1ffc92d2e382717965b8191ad0d4dc29d9754d8f1c4f2a253936d4cc36a175e63</citedby><cites>FETCH-LOGICAL-c340t-1ffc92d2e382717965b8191ad0d4dc29d9754d8f1c4f2a253936d4cc36a175e63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids></links><search><creatorcontrib>Lu, Dengxue</creatorcontrib><creatorcontrib>Yuhui Zhao</creatorcontrib><creatorcontrib>Rongbin Han</creatorcontrib><creatorcontrib>Long Wang</creatorcontrib><creatorcontrib>Peng Qin</creatorcontrib><title>complete chloroplast genome sequence of the Purple Feathergrass Stipa purpurea (Poales: Poaceae)</title><title>Conservation genetics resources</title><addtitle>Conservation Genet Resour</addtitle><description>The complete chloroplast genome of the Purple Feathergrass Stipa purpurea (Poales: Poaceae: Stipeae) has been assembled from the whole-genome Illumina sequencing data. The circular genome is 137,370 bp in size, and comprises a pair of inverted repeat regions of 21,663 bp each, a large single-copy region of 81,202 bp and a small single-copy region of 12,842 bp. It harbors 130 genes, including 84 protein-coding genes (78 PCG species), eight ribosomal RNA genes (four rRNA species) and 38 transfer RNA genes (30 tRNA species). The base composition is asymmetric (30.7 % A, 19.3 % C, 19.5 % G, 30.5 % T) with an overall A+T content of 61.2 %. Phylogenetic analysis indicated that S. purpurea is more phylogenetically related to its contribal counterparts than to those from other tribes, except for the case of Ampelodesmos mauritanicus (tribe Ampelodesmeae) probably due to its identity as an ancient hybrid between parents from Stipeae and Phaenospermateae.</description><subject>Ampelodesmos mauritanicus</subject><subject>Animal Genetics and Genomics</subject><subject>Base composition</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Conservation Biology/Ecology</subject><subject>Ecology</subject><subject>Evolutionary Biology</subject><subject>genes</subject><subject>Genomes</subject><subject>hybrids</subject><subject>Inverted repeat</subject><subject>Life Sciences</subject><subject>Nucleotide sequence</subject><subject>nucleotide sequences</subject><subject>parents</subject><subject>Phylogeny</subject><subject>Plant Genetics and Genomics</subject><subject>Poaceae</subject><subject>Poales</subject><subject>ribosomal RNA</subject><subject>rRNA</subject><subject>Species</subject><subject>Stipa</subject><subject>Stipa purpurea</subject><subject>Technical Note</subject><subject>Transfer RNA</subject><subject>tRNA</subject><issn>1877-7252</issn><issn>1877-7260</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><recordid>eNp9kE1LAzEQhoMoWKs_wJMBL3pYzcdusvEmxapQsFB7jjE72Va2zZrsQv33pqzozcMwM8zzzgwvQueU3FBC5G2kTJQiIzRFQVW2O0AjWkqZSSbI4W9dsGN0EuMHIaLkjI3Qm_WbtoEOsF01Pvi2MbHDNWz9BnCEzx62FrB3uFsBnvchsXgKJnWhDiZGvOjWrcFtmvQBDL6ae9NAvMMpWzBwfYqOnGkinP3kMVpOH14nT9ns5fF5cj_LLM9Jl1HnrGIVA14ySaUSxXtJFTUVqfLKMlUpWeRV6ajNHTOs4IqLKreWC0NlAYKP0eWwtw0-fR07_eH7sE0nNcuJUJITRhJFB8oGH2MAp9uw3pjwpSnReyP1YKRORuq9kXqXNGzQxMRuawh_m_8TXQwiZ7w2dVhHvVywBBBCS1pwzr8BMlR_sQ</recordid><startdate>20160601</startdate><enddate>20160601</enddate><creator>Lu, Dengxue</creator><creator>Yuhui Zhao</creator><creator>Rongbin Han</creator><creator>Long Wang</creator><creator>Peng Qin</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FH</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope></search><sort><creationdate>20160601</creationdate><title>complete chloroplast genome sequence of the Purple Feathergrass Stipa purpurea (Poales: Poaceae)</title><author>Lu, Dengxue ; Yuhui Zhao ; Rongbin Han ; Long Wang ; Peng Qin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c340t-1ffc92d2e382717965b8191ad0d4dc29d9754d8f1c4f2a253936d4cc36a175e63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Ampelodesmos mauritanicus</topic><topic>Animal Genetics and Genomics</topic><topic>Base composition</topic><topic>Biodiversity</topic><topic>Biomedical and Life Sciences</topic><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Conservation Biology/Ecology</topic><topic>Ecology</topic><topic>Evolutionary Biology</topic><topic>genes</topic><topic>Genomes</topic><topic>hybrids</topic><topic>Inverted repeat</topic><topic>Life Sciences</topic><topic>Nucleotide sequence</topic><topic>nucleotide sequences</topic><topic>parents</topic><topic>Phylogeny</topic><topic>Plant Genetics and Genomics</topic><topic>Poaceae</topic><topic>Poales</topic><topic>ribosomal RNA</topic><topic>rRNA</topic><topic>Species</topic><topic>Stipa</topic><topic>Stipa purpurea</topic><topic>Technical Note</topic><topic>Transfer RNA</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lu, Dengxue</creatorcontrib><creatorcontrib>Yuhui Zhao</creatorcontrib><creatorcontrib>Rongbin Han</creatorcontrib><creatorcontrib>Long Wang</creatorcontrib><creatorcontrib>Peng Qin</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest Biological Science Collection</collection><collection>ProQuest Biological Science Journals</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><jtitle>Conservation genetics resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lu, Dengxue</au><au>Yuhui Zhao</au><au>Rongbin Han</au><au>Long Wang</au><au>Peng Qin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>complete chloroplast genome sequence of the Purple Feathergrass Stipa purpurea (Poales: Poaceae)</atitle><jtitle>Conservation genetics resources</jtitle><stitle>Conservation Genet Resour</stitle><date>2016-06-01</date><risdate>2016</risdate><volume>8</volume><issue>2</issue><spage>101</spage><epage>104</epage><pages>101-104</pages><issn>1877-7252</issn><eissn>1877-7260</eissn><abstract>The complete chloroplast genome of the Purple Feathergrass Stipa purpurea (Poales: Poaceae: Stipeae) has been assembled from the whole-genome Illumina sequencing data. The circular genome is 137,370 bp in size, and comprises a pair of inverted repeat regions of 21,663 bp each, a large single-copy region of 81,202 bp and a small single-copy region of 12,842 bp. It harbors 130 genes, including 84 protein-coding genes (78 PCG species), eight ribosomal RNA genes (four rRNA species) and 38 transfer RNA genes (30 tRNA species). The base composition is asymmetric (30.7 % A, 19.3 % C, 19.5 % G, 30.5 % T) with an overall A+T content of 61.2 %. Phylogenetic analysis indicated that S. purpurea is more phylogenetically related to its contribal counterparts than to those from other tribes, except for the case of Ampelodesmos mauritanicus (tribe Ampelodesmeae) probably due to its identity as an ancient hybrid between parents from Stipeae and Phaenospermateae.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s12686-016-0519-x</doi><tpages>4</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1877-7252
ispartof Conservation genetics resources, 2016-06, Vol.8 (2), p.101-104
issn 1877-7252
1877-7260
language eng
recordid cdi_proquest_journals_2406973020
source Springer Nature
subjects Ampelodesmos mauritanicus
Animal Genetics and Genomics
Base composition
Biodiversity
Biomedical and Life Sciences
chloroplast genome
Chloroplasts
Conservation Biology/Ecology
Ecology
Evolutionary Biology
genes
Genomes
hybrids
Inverted repeat
Life Sciences
Nucleotide sequence
nucleotide sequences
parents
Phylogeny
Plant Genetics and Genomics
Poaceae
Poales
ribosomal RNA
rRNA
Species
Stipa
Stipa purpurea
Technical Note
Transfer RNA
tRNA
title complete chloroplast genome sequence of the Purple Feathergrass Stipa purpurea (Poales: Poaceae)
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-21T12%3A13%3A24IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=complete%20chloroplast%20genome%20sequence%20of%20the%20Purple%20Feathergrass%20Stipa%20purpurea%20(Poales:%20Poaceae)&rft.jtitle=Conservation%20genetics%20resources&rft.au=Lu,%20Dengxue&rft.date=2016-06-01&rft.volume=8&rft.issue=2&rft.spage=101&rft.epage=104&rft.pages=101-104&rft.issn=1877-7252&rft.eissn=1877-7260&rft_id=info:doi/10.1007/s12686-016-0519-x&rft_dat=%3Cproquest_cross%3E2406973020%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c340t-1ffc92d2e382717965b8191ad0d4dc29d9754d8f1c4f2a253936d4cc36a175e63%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2406973020&rft_id=info:pmid/&rfr_iscdi=true