Gill transcriptomes reveal expression changes of genes related with immune and ion transport under salinity stress in silvery pomfret (Pampus argenteus)

Salinity is a major ecological factor in the marine environment, and extremely important for the survival, development, and growth of fish. In this study, gill transcriptomes were examined by high-throughput sequencing at three different salinities (12 ppt as low salinity, 22 ppt as control salinity...

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Published in:Fish physiology and biochemistry 2020-08, Vol.46 (4), p.1255-1277
Main Authors: Li, Juan, Xue, Liangyi, Cao, Mingyue, Zhang, Yu, Wang, Yajun, Xu, Shanliang, Zheng, Baoxiao, Lou, Zhengjia
Format: Article
Language:English
Subjects:
Animal Anatomy
Animal Biochemistry
Animal Physiology
Animals
Base Sequence
Biomedical and Life Sciences
Cardiac muscle
CCL19 protein
Cytokines
Down-Regulation
Environmental factors
Fish
Fishes - genetics
Fishes - immunology
Fishes - metabolism
Freshwater & Marine Ecology
Gene expression
Gene Expression Regulation
Genes
Gills - immunology
Gills - metabolism
Histology
IL-1β
Immune response
Interleukin 11
Ion transport
IP-10 protein
Life Sciences
Marine environment
Molecular Sequence Annotation
Morphology
Muscle contraction
Muscles
Muscular function
Next-generation sequencing
NLR Proteins - immunology
Osmosis
Osmotic Pressure
Random Allocation
Receptors
Receptors, Cytokine - immunology
RNA, Messenger - metabolism
Salinity
Salinity effects
Salt Stress - genetics
Salt Stress - immunology
Salt Stress - physiology
Signal Transduction
Smooth muscle
Survival
TLR2 protein
Toll-like receptors
Toll-Like Receptors - metabolism
Transcriptome
Tumor necrosis factor-α
Up-Regulation
Zoology
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container_title Fish physiology and biochemistry
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Xue, Liangyi
Cao, Mingyue
Zhang, Yu
Wang, Yajun
Xu, Shanliang
Zheng, Baoxiao
Lou, Zhengjia
description Salinity is a major ecological factor in the marine environment, and extremely important for the survival, development, and growth of fish. In this study, gill transcriptomes were examined by high-throughput sequencing at three different salinities (12 ppt as low salinity, 22 ppt as control salinity, and 32 ppt as high salinity) in an importantly economical fish silvery pomfret. A total of 187 genes were differentially expressed, including 111 up-regulated and 76 down-regulated transcripts in low-salinity treatment group and 107 genes differentially expressed, including 74 up-regulated and 33 down-regulated transcripts in high-salinity treatment group compared with the control group, respectively. Some pathways including NOD-like receptor signaling pathway, cytokine-cytokine receptor interaction, Toll-like receptor pathway, cardiac muscle contraction, and vascular smooth muscle contraction were significantly enriched. qPCR analysis further confirmed that mRNA expression levels of immune ( HSP90A , IL-1β , TNFα , TLR2 , IP-10 , MIG , CCL19 , and IL-11 ) and ion transport–related genes ( WNK2 , NPY2R , CFTR , and SLC4A2 ) significantly changed under salinity stress. Low salinity stress caused more intensive expression changes of immune-related genes than high salinity. These results imply that salinity stress may affect immune function in addition to regulating osmotic pressure in silvery pomfret.
doi_str_mv 10.1007/s10695-020-00786-9
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In this study, gill transcriptomes were examined by high-throughput sequencing at three different salinities (12 ppt as low salinity, 22 ppt as control salinity, and 32 ppt as high salinity) in an importantly economical fish silvery pomfret. A total of 187 genes were differentially expressed, including 111 up-regulated and 76 down-regulated transcripts in low-salinity treatment group and 107 genes differentially expressed, including 74 up-regulated and 33 down-regulated transcripts in high-salinity treatment group compared with the control group, respectively. Some pathways including NOD-like receptor signaling pathway, cytokine-cytokine receptor interaction, Toll-like receptor pathway, cardiac muscle contraction, and vascular smooth muscle contraction were significantly enriched. qPCR analysis further confirmed that mRNA expression levels of immune ( HSP90A , IL-1β , TNFα , TLR2 , IP-10 , MIG , CCL19 , and IL-11 ) and ion transport–related genes ( WNK2 , NPY2R , CFTR , and SLC4A2 ) significantly changed under salinity stress. Low salinity stress caused more intensive expression changes of immune-related genes than high salinity. These results imply that salinity stress may affect immune function in addition to regulating osmotic pressure in silvery pomfret.</description><identifier>ISSN: 0920-1742</identifier><identifier>EISSN: 1573-5168</identifier><identifier>DOI: 10.1007/s10695-020-00786-9</identifier><identifier>PMID: 32162151</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Anatomy ; Animal Biochemistry ; Animal Physiology ; Animals ; Base Sequence ; Biomedical and Life Sciences ; Cardiac muscle ; CCL19 protein ; Cytokines ; Down-Regulation ; Environmental factors ; Fish ; Fishes - genetics ; Fishes - immunology ; Fishes - metabolism ; Freshwater &amp; Marine Ecology ; Gene expression ; Gene Expression Regulation ; Genes ; Gills - immunology ; Gills - metabolism ; Histology ; IL-1β ; Immune response ; Interleukin 11 ; Ion transport ; IP-10 protein ; Life Sciences ; Marine environment ; Molecular Sequence Annotation ; Morphology ; Muscle contraction ; Muscles ; Muscular function ; Next-generation sequencing ; NLR Proteins - immunology ; Osmosis ; Osmotic Pressure ; Random Allocation ; Receptors ; Receptors, Cytokine - immunology ; RNA, Messenger - metabolism ; Salinity ; Salinity effects ; Salt Stress - genetics ; Salt Stress - immunology ; Salt Stress - physiology ; Signal Transduction ; Smooth muscle ; Survival ; TLR2 protein ; Toll-like receptors ; Toll-Like Receptors - metabolism ; Transcriptome ; Tumor necrosis factor-α ; Up-Regulation ; Zoology</subject><ispartof>Fish physiology and biochemistry, 2020-08, Vol.46 (4), p.1255-1277</ispartof><rights>Springer Nature B.V. 2020</rights><rights>Springer Nature B.V. 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32162151$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Juan</creatorcontrib><creatorcontrib>Xue, Liangyi</creatorcontrib><creatorcontrib>Cao, Mingyue</creatorcontrib><creatorcontrib>Zhang, Yu</creatorcontrib><creatorcontrib>Wang, Yajun</creatorcontrib><creatorcontrib>Xu, Shanliang</creatorcontrib><creatorcontrib>Zheng, Baoxiao</creatorcontrib><creatorcontrib>Lou, Zhengjia</creatorcontrib><title>Gill transcriptomes reveal expression changes of genes related with immune and ion transport under salinity stress in silvery pomfret (Pampus argenteus)</title><title>Fish physiology and biochemistry</title><addtitle>Fish Physiol Biochem</addtitle><addtitle>Fish Physiol Biochem</addtitle><description>Salinity is a major ecological factor in the marine environment, and extremely important for the survival, development, and growth of fish. 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Some pathways including NOD-like receptor signaling pathway, cytokine-cytokine receptor interaction, Toll-like receptor pathway, cardiac muscle contraction, and vascular smooth muscle contraction were significantly enriched. qPCR analysis further confirmed that mRNA expression levels of immune ( HSP90A , IL-1β , TNFα , TLR2 , IP-10 , MIG , CCL19 , and IL-11 ) and ion transport–related genes ( WNK2 , NPY2R , CFTR , and SLC4A2 ) significantly changed under salinity stress. Low salinity stress caused more intensive expression changes of immune-related genes than high salinity. These results imply that salinity stress may affect immune function in addition to regulating osmotic pressure in silvery pomfret.</description><subject>Animal Anatomy</subject><subject>Animal Biochemistry</subject><subject>Animal Physiology</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Biomedical and Life Sciences</subject><subject>Cardiac muscle</subject><subject>CCL19 protein</subject><subject>Cytokines</subject><subject>Down-Regulation</subject><subject>Environmental factors</subject><subject>Fish</subject><subject>Fishes - genetics</subject><subject>Fishes - immunology</subject><subject>Fishes - metabolism</subject><subject>Freshwater &amp; Marine Ecology</subject><subject>Gene expression</subject><subject>Gene Expression Regulation</subject><subject>Genes</subject><subject>Gills - immunology</subject><subject>Gills - metabolism</subject><subject>Histology</subject><subject>IL-1β</subject><subject>Immune response</subject><subject>Interleukin 11</subject><subject>Ion transport</subject><subject>IP-10 protein</subject><subject>Life Sciences</subject><subject>Marine environment</subject><subject>Molecular Sequence Annotation</subject><subject>Morphology</subject><subject>Muscle contraction</subject><subject>Muscles</subject><subject>Muscular function</subject><subject>Next-generation sequencing</subject><subject>NLR Proteins - immunology</subject><subject>Osmosis</subject><subject>Osmotic Pressure</subject><subject>Random Allocation</subject><subject>Receptors</subject><subject>Receptors, Cytokine - immunology</subject><subject>RNA, Messenger - metabolism</subject><subject>Salinity</subject><subject>Salinity effects</subject><subject>Salt Stress - genetics</subject><subject>Salt Stress - immunology</subject><subject>Salt Stress - physiology</subject><subject>Signal Transduction</subject><subject>Smooth muscle</subject><subject>Survival</subject><subject>TLR2 protein</subject><subject>Toll-like receptors</subject><subject>Toll-Like Receptors - metabolism</subject><subject>Transcriptome</subject><subject>Tumor necrosis factor-α</subject><subject>Up-Regulation</subject><subject>Zoology</subject><issn>0920-1742</issn><issn>1573-5168</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNpFkcFu1DAURS0EotPCD7BAT2JDFwE_J46TJaqgIFVqF2VteeyX1lXiBNspzJ_wuXhmirqynu7RsXQvY--Qf0LO1eeEvO1lxQWvytm1Vf-CbVCqupLYdi_ZhvclQtWIE3aa0gPnvFctvmYntcBWoMQN-3vpxxFyNCHZ6Jc8T5Qg0iOZEejPEiklPwew9ybclWQe4I7CARlNJge_fb4HP01rIDDBwR4-2JY5ZliDowjJjD74vIOU9z7wAZIfHynuYJmnIVKGjzdmWtYEJhZ9pjWdv2GvBjMmevv0nrGf377eXnyvrq4vf1x8uaoW7HiukNByYbtOklQO1VYMVpFtpVHWbQdrccDGuC0OVnSdc6qX6LqBOxRyX1p9xj4cvUucf62Usn6Y1xjKl1o0paam6VEV6v0TtW4ncnqJfjJxp_8XWYD6CKQSlariswa53s-lj3PpMpc-zKX7-h9Yc4nK</recordid><startdate>20200801</startdate><enddate>20200801</enddate><creator>Li, Juan</creator><creator>Xue, Liangyi</creator><creator>Cao, Mingyue</creator><creator>Zhang, Yu</creator><creator>Wang, Yajun</creator><creator>Xu, Shanliang</creator><creator>Zheng, Baoxiao</creator><creator>Lou, Zhengjia</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>3V.</scope><scope>7QH</scope><scope>7QP</scope><scope>7QR</scope><scope>7TK</scope><scope>7TM</scope><scope>7TN</scope><scope>7U7</scope><scope>7UA</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H95</scope><scope>H98</scope><scope>H99</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L.F</scope><scope>L.G</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PCBAR</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope></search><sort><creationdate>20200801</creationdate><title>Gill transcriptomes reveal expression changes of genes related with immune and ion transport under salinity stress in silvery pomfret (Pampus argenteus)</title><author>Li, Juan ; 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In this study, gill transcriptomes were examined by high-throughput sequencing at three different salinities (12 ppt as low salinity, 22 ppt as control salinity, and 32 ppt as high salinity) in an importantly economical fish silvery pomfret. A total of 187 genes were differentially expressed, including 111 up-regulated and 76 down-regulated transcripts in low-salinity treatment group and 107 genes differentially expressed, including 74 up-regulated and 33 down-regulated transcripts in high-salinity treatment group compared with the control group, respectively. Some pathways including NOD-like receptor signaling pathway, cytokine-cytokine receptor interaction, Toll-like receptor pathway, cardiac muscle contraction, and vascular smooth muscle contraction were significantly enriched. qPCR analysis further confirmed that mRNA expression levels of immune ( HSP90A , IL-1β , TNFα , TLR2 , IP-10 , MIG , CCL19 , and IL-11 ) and ion transport–related genes ( WNK2 , NPY2R , CFTR , and SLC4A2 ) significantly changed under salinity stress. Low salinity stress caused more intensive expression changes of immune-related genes than high salinity. These results imply that salinity stress may affect immune function in addition to regulating osmotic pressure in silvery pomfret.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>32162151</pmid><doi>10.1007/s10695-020-00786-9</doi><tpages>23</tpages></addata></record>
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subjects Animal Anatomy
Animal Biochemistry
Animal Physiology
Animals
Base Sequence
Biomedical and Life Sciences
Cardiac muscle
CCL19 protein
Cytokines
Down-Regulation
Environmental factors
Fish
Fishes - genetics
Fishes - immunology
Fishes - metabolism
Freshwater & Marine Ecology
Gene expression
Gene Expression Regulation
Genes
Gills - immunology
Gills - metabolism
Histology
IL-1β
Immune response
Interleukin 11
Ion transport
IP-10 protein
Life Sciences
Marine environment
Molecular Sequence Annotation
Morphology
Muscle contraction
Muscles
Muscular function
Next-generation sequencing
NLR Proteins - immunology
Osmosis
Osmotic Pressure
Random Allocation
Receptors
Receptors, Cytokine - immunology
RNA, Messenger - metabolism
Salinity
Salinity effects
Salt Stress - genetics
Salt Stress - immunology
Salt Stress - physiology
Signal Transduction
Smooth muscle
Survival
TLR2 protein
Toll-like receptors
Toll-Like Receptors - metabolism
Transcriptome
Tumor necrosis factor-α
Up-Regulation
Zoology
title Gill transcriptomes reveal expression changes of genes related with immune and ion transport under salinity stress in silvery pomfret (Pampus argenteus)
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