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The complete chloroplast genome of Amygdalus mira (Rosaceae) a threatened wild Chinese peach
Amygdalus mira (Koehne) Ricker (Basionym: Prunus mira Koehne) is a wild relative species of peach belonging to Rosaceae family. It is likely the oldest progenitor of peach and considered threatened or even on the verge of extinction, which requires urgent conservation attention. To contribute to suc...
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| Published in: | Conservation genetics resources 2018-12, Vol.10 (4), p.801-803 |
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| container_end_page | 803 |
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| container_title | Conservation genetics resources |
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| creator | Amar, Mohamed Hamdy Magdy, Mahmoud Zhou, Hui Wang, Lu Han, Yuepeng |
| description | Amygdalus mira
(Koehne) Ricker (Basionym:
Prunus mira
Koehne) is a wild relative species of peach belonging to Rosaceae family. It is likely the oldest progenitor of peach and considered threatened or even on the verge of extinction, which requires urgent conservation attention. To contribute to such efforts, complete chloroplast genome of
A. mira
was assembled using Illumina Hiseq 2500 platform. The cpDNA genome is 157,330 bp in length and has a GC content of 36.80%, with a typical circular quadripartite structure comprising a pair of inverted repeats (IRA and IRB) separated by two single-copy regions. The cpDNA genome consisted of 88 coding sequences (CDS), 37 tRNAs and 8 rRNAs genes. 583 simple sequence repeat (SSR) motifs were identified, where hexa-nucleotide was the most common (27.7% of all SSRs). The complete cpDNA genome of
A. mira
will be of valuable data for the upcoming research on comparative population genomics of peach. |
| doi_str_mv | 10.1007/s12686-017-0934-7 |
| format | article |
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(Koehne) Ricker (Basionym:
Prunus mira
Koehne) is a wild relative species of peach belonging to Rosaceae family. It is likely the oldest progenitor of peach and considered threatened or even on the verge of extinction, which requires urgent conservation attention. To contribute to such efforts, complete chloroplast genome of
A. mira
was assembled using Illumina Hiseq 2500 platform. The cpDNA genome is 157,330 bp in length and has a GC content of 36.80%, with a typical circular quadripartite structure comprising a pair of inverted repeats (IRA and IRB) separated by two single-copy regions. The cpDNA genome consisted of 88 coding sequences (CDS), 37 tRNAs and 8 rRNAs genes. 583 simple sequence repeat (SSR) motifs were identified, where hexa-nucleotide was the most common (27.7% of all SSRs). The complete cpDNA genome of
A. mira
will be of valuable data for the upcoming research on comparative population genomics of peach.</description><identifier>ISSN: 1877-7252</identifier><identifier>EISSN: 1877-7260</identifier><identifier>DOI: 10.1007/s12686-017-0934-7</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Amygdalus mira ; Animal Genetics and Genomics ; Biodiversity ; Biomedical and Life Sciences ; Chloroplasts ; Conservation Biology/Ecology ; Ecology ; Evolutionary Biology ; Genomes ; Life Sciences ; Plant Genetics and Genomics ; Population genetics ; Prunus mira ; Rosaceae ; Technical Note ; Threatened species</subject><ispartof>Conservation genetics resources, 2018-12, Vol.10 (4), p.801-803</ispartof><rights>Springer Science+Business Media B.V., part of Springer Nature 2017</rights><rights>Springer Science+Business Media B.V., part of Springer Nature 2017.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c316t-923089d5ff4484dffecb7cc9b04860e349ceb40d71dc2e9b03d4d99990e2e15b3</citedby><cites>FETCH-LOGICAL-c316t-923089d5ff4484dffecb7cc9b04860e349ceb40d71dc2e9b03d4d99990e2e15b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Amar, Mohamed Hamdy</creatorcontrib><creatorcontrib>Magdy, Mahmoud</creatorcontrib><creatorcontrib>Zhou, Hui</creatorcontrib><creatorcontrib>Wang, Lu</creatorcontrib><creatorcontrib>Han, Yuepeng</creatorcontrib><title>The complete chloroplast genome of Amygdalus mira (Rosaceae) a threatened wild Chinese peach</title><title>Conservation genetics resources</title><addtitle>Conservation Genet Resour</addtitle><description>Amygdalus mira
(Koehne) Ricker (Basionym:
Prunus mira
Koehne) is a wild relative species of peach belonging to Rosaceae family. It is likely the oldest progenitor of peach and considered threatened or even on the verge of extinction, which requires urgent conservation attention. To contribute to such efforts, complete chloroplast genome of
A. mira
was assembled using Illumina Hiseq 2500 platform. The cpDNA genome is 157,330 bp in length and has a GC content of 36.80%, with a typical circular quadripartite structure comprising a pair of inverted repeats (IRA and IRB) separated by two single-copy regions. The cpDNA genome consisted of 88 coding sequences (CDS), 37 tRNAs and 8 rRNAs genes. 583 simple sequence repeat (SSR) motifs were identified, where hexa-nucleotide was the most common (27.7% of all SSRs). The complete cpDNA genome of
A. mira
will be of valuable data for the upcoming research on comparative population genomics of peach.</description><subject>Amygdalus mira</subject><subject>Animal Genetics and Genomics</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>Chloroplasts</subject><subject>Conservation Biology/Ecology</subject><subject>Ecology</subject><subject>Evolutionary Biology</subject><subject>Genomes</subject><subject>Life Sciences</subject><subject>Plant Genetics and Genomics</subject><subject>Population genetics</subject><subject>Prunus mira</subject><subject>Rosaceae</subject><subject>Technical Note</subject><subject>Threatened species</subject><issn>1877-7252</issn><issn>1877-7260</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNp1kEtLxDAUhYMoOI7-AHcBN7qo5jVNuxwGXyAIMu6EkCY30w5tU5MOMv_eDBVdeTf3cDnnXPgQuqTklhIi7yJleZFnhMqMlFxk8gjNaCFlJllOjn_1gp2isxi3hOQFZ2yGPtY1YOO7oYUxibr1wQ-tjiPeQO87wN7hZbffWN3uIu6aoPH1m4_agIYbrPFYB9Aj9GDxV9NavKqbHiLgAbSpz9GJ022Ei589R-8P9-vVU_by-vi8Wr5khtN8zErGSVHahXNCFMI6B6aSxpQVEUVOgIvSQCWIldQaBunMrbBlGgIM6KLic3Q19Q7Bf-4gjmrrd6FPLxUTnDCe2JTJRSeXCT7GAE4Noel02CtK1AGimiCqBFEdICqZMmzKxOTtNxD-mv8PfQP-IHSx</recordid><startdate>20181201</startdate><enddate>20181201</enddate><creator>Amar, Mohamed Hamdy</creator><creator>Magdy, Mahmoud</creator><creator>Zhou, Hui</creator><creator>Wang, Lu</creator><creator>Han, Yuepeng</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FH</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope></search><sort><creationdate>20181201</creationdate><title>The complete chloroplast genome of Amygdalus mira (Rosaceae) a threatened wild Chinese peach</title><author>Amar, Mohamed Hamdy ; Magdy, Mahmoud ; Zhou, Hui ; Wang, Lu ; Han, Yuepeng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c316t-923089d5ff4484dffecb7cc9b04860e349ceb40d71dc2e9b03d4d99990e2e15b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Amygdalus mira</topic><topic>Animal Genetics and Genomics</topic><topic>Biodiversity</topic><topic>Biomedical and Life Sciences</topic><topic>Chloroplasts</topic><topic>Conservation Biology/Ecology</topic><topic>Ecology</topic><topic>Evolutionary Biology</topic><topic>Genomes</topic><topic>Life Sciences</topic><topic>Plant Genetics and Genomics</topic><topic>Population genetics</topic><topic>Prunus mira</topic><topic>Rosaceae</topic><topic>Technical Note</topic><topic>Threatened species</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Amar, Mohamed Hamdy</creatorcontrib><creatorcontrib>Magdy, Mahmoud</creatorcontrib><creatorcontrib>Zhou, Hui</creatorcontrib><creatorcontrib>Wang, Lu</creatorcontrib><creatorcontrib>Han, Yuepeng</creatorcontrib><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>Biological Sciences</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><jtitle>Conservation genetics resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Amar, Mohamed Hamdy</au><au>Magdy, Mahmoud</au><au>Zhou, Hui</au><au>Wang, Lu</au><au>Han, Yuepeng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete chloroplast genome of Amygdalus mira (Rosaceae) a threatened wild Chinese peach</atitle><jtitle>Conservation genetics resources</jtitle><stitle>Conservation Genet Resour</stitle><date>2018-12-01</date><risdate>2018</risdate><volume>10</volume><issue>4</issue><spage>801</spage><epage>803</epage><pages>801-803</pages><issn>1877-7252</issn><eissn>1877-7260</eissn><abstract>Amygdalus mira
(Koehne) Ricker (Basionym:
Prunus mira
Koehne) is a wild relative species of peach belonging to Rosaceae family. It is likely the oldest progenitor of peach and considered threatened or even on the verge of extinction, which requires urgent conservation attention. To contribute to such efforts, complete chloroplast genome of
A. mira
was assembled using Illumina Hiseq 2500 platform. The cpDNA genome is 157,330 bp in length and has a GC content of 36.80%, with a typical circular quadripartite structure comprising a pair of inverted repeats (IRA and IRB) separated by two single-copy regions. The cpDNA genome consisted of 88 coding sequences (CDS), 37 tRNAs and 8 rRNAs genes. 583 simple sequence repeat (SSR) motifs were identified, where hexa-nucleotide was the most common (27.7% of all SSRs). The complete cpDNA genome of
A. mira
will be of valuable data for the upcoming research on comparative population genomics of peach.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s12686-017-0934-7</doi><tpages>3</tpages></addata></record> |
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| ispartof | Conservation genetics resources, 2018-12, Vol.10 (4), p.801-803 |
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| language | eng |
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| source | Springer Nature |
| subjects | Amygdalus mira Animal Genetics and Genomics Biodiversity Biomedical and Life Sciences Chloroplasts Conservation Biology/Ecology Ecology Evolutionary Biology Genomes Life Sciences Plant Genetics and Genomics Population genetics Prunus mira Rosaceae Technical Note Threatened species |
| title | The complete chloroplast genome of Amygdalus mira (Rosaceae) a threatened wild Chinese peach |
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