Extended Particle Swarm Optimization (EPSO) for Feature Selection of High Dimensional Biomedical Data

• Published in: arXiv.org 2020-08
• Main Authors: Ali Hakem Alsaeedi, Albukhnefis, Adil L, Al-Shammary, Dhiah, Al-Asfoor, Muntasir
• Format: Article
• Language: English
• Subjects: Biomedical data; Classification; Gene expression; Molecular biology; Optimization; Particle swarm optimization; Search process
• ISSN: 2331-8422

This paper proposes a novel Extended Particle Swarm Optimization model (EPSO) that potentially enhances the search process of PSO for optimization problem. Evidently, gene expression profiles are significantly important measurement factor in molecular biology that is used in medical diagnosis of cancer types. The challenge to certain classification methodologies for gene expression profiles lies in the thousands of features recorded for each sample. A modified Wrapper feature selection model is applied with the aim of addressing the gene classification challenge by replacing its randomness approach with EPSO and PSO respectively. EPSO is initializing the random size of the population and dividing them into two groups in order to promote the exploration and reduce the probability of falling in stagnation. Experimentally, EPSO has required less processing time to select the optimal features (average of 62.14 sec) than PSO (average of 95.72 sec). Furthermore, EPSO accuracy has provided better classification results (start from 54% to 100%) than PSO (start from 52% to 96%).