The estimated of 18.1 kDa class IV small heat shock protein (sHsp) from Hevea brasiliensis using of PHYRE2 and SWISS-MODEL software

The objective of research is Hevea and Ricinus which are two of the latex-producing plant species. The modelling of protein was obtained from Hevea brasiliensis and Ricinus communis . Identification of small heat shock heat protein 18.1kDa very different between hevea and ricinus to coverage 92% and...

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Bibliographic Details
Published in:IOP conference series. Earth and environmental science 2021-03, Vol.713 (1), p.12016
Main Authors: Pasaribu, S A, Basyuni, M, Purba, E, Hasanah, Y
Format: Article
Language:English
Subjects:
Binding sites
Heat shock proteins
Hevea
Hevea brasiliensis
Homology
Latex
Plant species
Ricinus
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Summary:The objective of research is Hevea and Ricinus which are two of the latex-producing plant species. The modelling of protein was obtained from Hevea brasiliensis and Ricinus communis . Identification of small heat shock heat protein 18.1kDa very different between hevea and ricinus to coverage 92% and 69% analyzed by SWISS-MODEL. In addition, the data from similarity, identity, range, and Q-mean were distinct. According to the PHYRE 2 analysis, we observed the residue presenting in Hevea and Ricinus not much different ( Hevea : 12-158; Ricinus : 11-156). The 3D-ligand site prediction confirms is not found in Hevea as well as Ricinus . Appropriately, the small heat shock protein involved in different species will be helpful in the development of stress tolerance in plant crops, the different homology images and templates were identified as different binding site predictions. These models can be used for supporting the Hevea and Ricinus proteins modeling, mainly in the molecular study.
ISSN:1755-1307
1755-1315
DOI:10.1088/1755-1315/713/1/012016