How can we learn (more) from challenges? A statistical approach to driving future algorithm development

Challenges have become the state-of-the-art approach to benchmark image analysis algorithms in a comparative manner. While the validation on identical data sets was a great step forward, results analysis is often restricted to pure ranking tables, leaving relevant questions unanswered. Specifically,...

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Bibliographic Details
Published in:arXiv.org 2021-06
Main Authors: Roß, Tobias, Bruno, Pierangela, Reinke, Annika, Wiesenfarth, Manuel, Koeppel, Lisa, Full, Peter M, Pekdemir, Bünyamin, Godau, Patrick, Trofimova, Darya, Isensee, Fabian, Moccia, Sara, Calimeri, Francesco, Müller-Stich, Beat P, Kopp-Schneider, Annette, Maier-Hein, Lena
Format: Article
Language:English
Subjects:
Algorithms
Image analysis
Image annotation
Image segmentation
Machine learning
Medical imaging
Medical instruments
Occlusion
Robustness
Online Access:Get full text
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Summary:Challenges have become the state-of-the-art approach to benchmark image analysis algorithms in a comparative manner. While the validation on identical data sets was a great step forward, results analysis is often restricted to pure ranking tables, leaving relevant questions unanswered. Specifically, little effort has been put into the systematic investigation on what characterizes images in which state-of-the-art algorithms fail. To address this gap in the literature, we (1) present a statistical framework for learning from challenges and (2) instantiate it for the specific task of instrument instance segmentation in laparoscopic videos. Our framework relies on the semantic meta data annotation of images, which serves as foundation for a General Linear Mixed Models (GLMM) analysis. Based on 51,542 meta data annotations performed on 2,728 images, we applied our approach to the results of the Robust Medical Instrument Segmentation Challenge (ROBUST-MIS) challenge 2019 and revealed underexposure, motion and occlusion of instruments as well as the presence of smoke or other objects in the background as major sources of algorithm failure. Our subsequent method development, tailored to the specific remaining issues, yielded a deep learning model with state-of-the-art overall performance and specific strengths in the processing of images in which previous methods tended to fail. Due to the objectivity and generic applicability of our approach, it could become a valuable tool for validation in the field of medical image analysis and beyond. and segmentation of small, crossing, moving and transparent instrument(s) (parts).
ISSN:2331-8422