Development of a DNAzyme-based colorimetric biosensor assay for dual detection of Cd2+ and Hg2

• Published in: Analytical and bioanalytical chemistry 2021-11, Vol.413 (28), p.7081-7091
• Main Authors: Li, Dawei, Ling, Shen, Cheng, Xinru, Yang, Zhaoqi, Lv, Bei
• Format: Article
• Language: English
• Subjects: Analytical Chemistry; Assaying; Avidin; Beads; Binding; Biochemistry; Biosensors; Biotin; Cadmium; Catalytic activity; Characterization and Evaluation of Materials; Chemistry; Chemistry and Materials Science; Colorimetry; Deoxyribonucleic acid; Detection limits; DNA; DNA probes; Endonuclease; Environmental monitoring; Food Science; Gene sequencing; Hemin; Hydrogen peroxide; Laboratory Medicine; Mercury; Mercury (metal); Metal ions; Monitoring/Environmental Analysis; Nucleotide sequence; Oligonucleotides; Oxidation; Phosphorothioate; Probes; Research Paper; Selectivity; Signal transduction; Single-stranded DNA; Substrates; Water analysis; Water sampling
• ISSN: 1618-2642; 1618-2650
• DOI: 10.1007/s00216-021-03677-x

A colorimetric biosensor assay has been developed for Cd 2+ and Hg 2+ detection based on Cd 2+ -dependent DNAzyme cleavage and Hg 2+ -binding-induced conformational switching of the G-quadruplex fragment. Two types of multifunctional magnetic beads (Cd-MBs and Hg-MBs) were synthesized by immobilizing two functionalized DNA sequences on magnetic beads via avidin-biotin chemistry. For Cd 2+ detection, Cd-MBs are used as recognition probes, which are modified with a single phosphorothioate ribonucleobase (rA) substrate (PS substrate) and a Cd 2+ -specific DNAzyme (Cdzyme). In the presence of Cd 2+ , the PS substrate is cleaved by Cdzyme, and single-stranded DNA is released as the signal transduction sequence. After molecular assembly with the other two oligonucleotides, duplex DNA is produced, and it can be recognized and cleaved by FokI endonuclease. Thus, a signal output component consisting of a G-quadruplex fragment is released, which catalyzes the oxidation of ABTS with the addition of hemin and H 2 O 2 , inducing a remarkably amplified colorimetric signal. To rule out false-positive results and reduce interference signals, Hg-MBs modified with poly-T fragments were used as Hg 2+ accumulation probes during the course of Cd 2+ detection. On the other hand, Hg-MBs can perform their second function in Hg 2+ detection by changing the catalytic activity of the G-quadruplex/hemin DNAzyme. In the presence of Hg 2+ , the G-quadruplex structure in Hg-MBs is disrupted upon Hg 2+ binding. In the absence of Hg 2+ , an intensified color change can be observed by the naked eye for the formation of intact G-quadruplex/hemin DNAzymes. The biosensor assay exhibits excellent selectivity and high sensitivity. The detection limits for Cd 2+ and Hg 2+ are 1.9 nM and 19.5 nM, respectively. Moreover, the constructed sensors were used to detect environmental water samples, and the results indicate that the detection system is reliable and could be further used in environmental monitoring. The design strategy reported in this study could broadly extend the application of metal ion-specific DNAzyme-based biosensors. Graphical abstract