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Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid
The γ‐aminobutyric acid (GABA) is the most important inhibitory neurotransmitter in vertebrate central nervous systems. Taking full account of the measured X‐ray diffractogram of its stable monoclinic polymorph, we have performed density functional theory (DFT) calculations to analyze/understand its...
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Published in: | Journal of Raman spectroscopy 2021-07, Vol.52 (7), p.1294-1307 |
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creator | Silva, José Barbosa Costa, Gabriel Silva, Mauricélio Bezerra Costa, Stefane Nunes Santos, Regina Cláudia Rodrigues Sales, Francisco Adilson Matos Valentini, Antoninho Caetano, Ewerton Wagner Santos Freire, Valder Nogueira |
description | The γ‐aminobutyric acid (GABA) is the most important inhibitory neurotransmitter in vertebrate central nervous systems. Taking full account of the measured X‐ray diffractogram of its stable monoclinic polymorph, we have performed density functional theory (DFT) calculations to analyze/understand its infrared and Raman spectra considering its monoclinic polymorph, an isolated stabilized (120) plane, and a single GABA molecule. Besides, phonon dispersion/density of states, heat capacity, Debye temperature, and entropy/enthalpy/free energies were also obtained for the GABA monoclinic crystal. Vibrational signatures due to the GABA (120) planes are pointed out for the first time for several wavenumbers. The results obtained for the GABA monoclinic polymorph reinforce the need of dispersion‐corrected solid‐state calculations to describe the vibrational properties of molecular crystals instead of considering a single isolated molecule picture, even for wavenumbers larger than those usually associated with lattice modes.
Measurements of the infrared and Raman spectra of the monoclinic form of the GABA crystal were analyzed through DFT calculations, obtaining its theoretical IR and Raman spectra. DFT calculations were also performed on a 2D GABA crystal and a single isolated neutral GABA molecule. The calculated spectra for the solid state shows the best agreement with the measured data, especially for wavenumbers smaller than 1300 cm−1. Some rich vibrational planar features were found as well. |
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Measurements of the infrared and Raman spectra of the monoclinic form of the GABA crystal were analyzed through DFT calculations, obtaining its theoretical IR and Raman spectra. DFT calculations were also performed on a 2D GABA crystal and a single isolated neutral GABA molecule. The calculated spectra for the solid state shows the best agreement with the measured data, especially for wavenumbers smaller than 1300 cm−1. Some rich vibrational planar features were found as well.</description><identifier>ISSN: 0377-0486</identifier><identifier>EISSN: 1097-4555</identifier><identifier>DOI: 10.1002/jrs.6134</identifier><language>eng</language><publisher>Bognor Regis: Wiley Subscription Services, Inc</publisher><subject>Amino acids ; Crystals ; Debye temperature ; Density functional theory ; Enthalpy ; Entropy ; gamma‐aminobutyric acid (GABA) crystal ; Infrared analysis ; Infrared spectra ; Lattice vibration ; Mathematical analysis ; Monoclinic lattice ; Neurotransmitters ; normal mode assignment ; Phonons ; planar vibrational signature ; Raman spectra ; Raman spectroscopy ; solid‐state DFT ; Spectrum analysis ; Vertebrates ; γ-Aminobutyric acid</subject><ispartof>Journal of Raman spectroscopy, 2021-07, Vol.52 (7), p.1294-1307</ispartof><rights>2021 John Wiley & Sons, Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3</citedby><cites>FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3</cites><orcidid>0000-0001-7941-3956 ; 0000-0001-7867-3908 ; 0000-0002-7019-6155 ; 0000-0002-1021-6927</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Silva, José Barbosa</creatorcontrib><creatorcontrib>Costa, Gabriel</creatorcontrib><creatorcontrib>Silva, Mauricélio Bezerra</creatorcontrib><creatorcontrib>Costa, Stefane Nunes</creatorcontrib><creatorcontrib>Santos, Regina Cláudia Rodrigues</creatorcontrib><creatorcontrib>Sales, Francisco Adilson Matos</creatorcontrib><creatorcontrib>Valentini, Antoninho</creatorcontrib><creatorcontrib>Caetano, Ewerton Wagner Santos</creatorcontrib><creatorcontrib>Freire, Valder Nogueira</creatorcontrib><title>Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid</title><title>Journal of Raman spectroscopy</title><description>The γ‐aminobutyric acid (GABA) is the most important inhibitory neurotransmitter in vertebrate central nervous systems. Taking full account of the measured X‐ray diffractogram of its stable monoclinic polymorph, we have performed density functional theory (DFT) calculations to analyze/understand its infrared and Raman spectra considering its monoclinic polymorph, an isolated stabilized (120) plane, and a single GABA molecule. Besides, phonon dispersion/density of states, heat capacity, Debye temperature, and entropy/enthalpy/free energies were also obtained for the GABA monoclinic crystal. Vibrational signatures due to the GABA (120) planes are pointed out for the first time for several wavenumbers. The results obtained for the GABA monoclinic polymorph reinforce the need of dispersion‐corrected solid‐state calculations to describe the vibrational properties of molecular crystals instead of considering a single isolated molecule picture, even for wavenumbers larger than those usually associated with lattice modes.
Measurements of the infrared and Raman spectra of the monoclinic form of the GABA crystal were analyzed through DFT calculations, obtaining its theoretical IR and Raman spectra. DFT calculations were also performed on a 2D GABA crystal and a single isolated neutral GABA molecule. The calculated spectra for the solid state shows the best agreement with the measured data, especially for wavenumbers smaller than 1300 cm−1. Some rich vibrational planar features were found as well.</description><subject>Amino acids</subject><subject>Crystals</subject><subject>Debye temperature</subject><subject>Density functional theory</subject><subject>Enthalpy</subject><subject>Entropy</subject><subject>gamma‐aminobutyric acid (GABA) crystal</subject><subject>Infrared analysis</subject><subject>Infrared spectra</subject><subject>Lattice vibration</subject><subject>Mathematical analysis</subject><subject>Monoclinic lattice</subject><subject>Neurotransmitters</subject><subject>normal mode assignment</subject><subject>Phonons</subject><subject>planar vibrational signature</subject><subject>Raman spectra</subject><subject>Raman spectroscopy</subject><subject>solid‐state DFT</subject><subject>Spectrum analysis</subject><subject>Vertebrates</subject><subject>γ-Aminobutyric acid</subject><issn>0377-0486</issn><issn>1097-4555</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp10MtKAzEUBuAgCtYq-AgBNy6cmmQyt2UVrUpB8LYdMskZmzJNxiRFZufWnc_ok5hat64C5_84nPwIHVMyoYSw86Xzk5ymfAeNKKmKhGdZtotGJC2KhPAy30cH3i8JIVWV0xH6fNGNE0FbIzrse5DBWS9tP2BhFO4X1ljz_fHloBMB4sDZHlzQ4LFt8SqmstNGSzybXkzPsMBbHlkAbewrbDJtFrrRwboBG1jHyAnjVzoEcFisIsNCanWI9lrReTj6e8fo-frq6fImmd_Pbi-n80SyKuWJUDlXEsqmbKCClJV5JirJhayytk3TUlUFbxQrmMxaqRSolImCCNW0wGkhmnSMTrZ745Fva_ChXtq1i9_3NcsZpyVhGY3qdKtk7MM7aOve6ZVwQ01JvSm6jkXXm6IjTbb0XXcw_Ovqu4fHX_8Du8GF9w</recordid><startdate>202107</startdate><enddate>202107</enddate><creator>Silva, José Barbosa</creator><creator>Costa, Gabriel</creator><creator>Silva, Mauricélio Bezerra</creator><creator>Costa, Stefane Nunes</creator><creator>Santos, Regina Cláudia Rodrigues</creator><creator>Sales, Francisco Adilson Matos</creator><creator>Valentini, Antoninho</creator><creator>Caetano, Ewerton Wagner Santos</creator><creator>Freire, Valder Nogueira</creator><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>7U9</scope><scope>8BQ</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>H94</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0001-7941-3956</orcidid><orcidid>https://orcid.org/0000-0001-7867-3908</orcidid><orcidid>https://orcid.org/0000-0002-7019-6155</orcidid><orcidid>https://orcid.org/0000-0002-1021-6927</orcidid></search><sort><creationdate>202107</creationdate><title>Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid</title><author>Silva, José Barbosa ; Costa, Gabriel ; Silva, Mauricélio Bezerra ; Costa, Stefane Nunes ; Santos, Regina Cláudia Rodrigues ; Sales, Francisco Adilson Matos ; Valentini, Antoninho ; Caetano, Ewerton Wagner Santos ; Freire, Valder Nogueira</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Amino acids</topic><topic>Crystals</topic><topic>Debye temperature</topic><topic>Density functional theory</topic><topic>Enthalpy</topic><topic>Entropy</topic><topic>gamma‐aminobutyric acid (GABA) crystal</topic><topic>Infrared analysis</topic><topic>Infrared spectra</topic><topic>Lattice vibration</topic><topic>Mathematical analysis</topic><topic>Monoclinic lattice</topic><topic>Neurotransmitters</topic><topic>normal mode assignment</topic><topic>Phonons</topic><topic>planar vibrational signature</topic><topic>Raman spectra</topic><topic>Raman spectroscopy</topic><topic>solid‐state DFT</topic><topic>Spectrum analysis</topic><topic>Vertebrates</topic><topic>γ-Aminobutyric acid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Silva, José Barbosa</creatorcontrib><creatorcontrib>Costa, Gabriel</creatorcontrib><creatorcontrib>Silva, Mauricélio Bezerra</creatorcontrib><creatorcontrib>Costa, Stefane Nunes</creatorcontrib><creatorcontrib>Santos, Regina Cláudia Rodrigues</creatorcontrib><creatorcontrib>Sales, Francisco Adilson Matos</creatorcontrib><creatorcontrib>Valentini, Antoninho</creatorcontrib><creatorcontrib>Caetano, Ewerton Wagner Santos</creatorcontrib><creatorcontrib>Freire, Valder Nogueira</creatorcontrib><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of Raman spectroscopy</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Silva, José Barbosa</au><au>Costa, Gabriel</au><au>Silva, Mauricélio Bezerra</au><au>Costa, Stefane Nunes</au><au>Santos, Regina Cláudia Rodrigues</au><au>Sales, Francisco Adilson Matos</au><au>Valentini, Antoninho</au><au>Caetano, Ewerton Wagner Santos</au><au>Freire, Valder Nogueira</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid</atitle><jtitle>Journal of Raman spectroscopy</jtitle><date>2021-07</date><risdate>2021</risdate><volume>52</volume><issue>7</issue><spage>1294</spage><epage>1307</epage><pages>1294-1307</pages><issn>0377-0486</issn><eissn>1097-4555</eissn><abstract>The γ‐aminobutyric acid (GABA) is the most important inhibitory neurotransmitter in vertebrate central nervous systems. Taking full account of the measured X‐ray diffractogram of its stable monoclinic polymorph, we have performed density functional theory (DFT) calculations to analyze/understand its infrared and Raman spectra considering its monoclinic polymorph, an isolated stabilized (120) plane, and a single GABA molecule. Besides, phonon dispersion/density of states, heat capacity, Debye temperature, and entropy/enthalpy/free energies were also obtained for the GABA monoclinic crystal. Vibrational signatures due to the GABA (120) planes are pointed out for the first time for several wavenumbers. The results obtained for the GABA monoclinic polymorph reinforce the need of dispersion‐corrected solid‐state calculations to describe the vibrational properties of molecular crystals instead of considering a single isolated molecule picture, even for wavenumbers larger than those usually associated with lattice modes.
Measurements of the infrared and Raman spectra of the monoclinic form of the GABA crystal were analyzed through DFT calculations, obtaining its theoretical IR and Raman spectra. DFT calculations were also performed on a 2D GABA crystal and a single isolated neutral GABA molecule. The calculated spectra for the solid state shows the best agreement with the measured data, especially for wavenumbers smaller than 1300 cm−1. Some rich vibrational planar features were found as well.</abstract><cop>Bognor Regis</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1002/jrs.6134</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0001-7941-3956</orcidid><orcidid>https://orcid.org/0000-0001-7867-3908</orcidid><orcidid>https://orcid.org/0000-0002-7019-6155</orcidid><orcidid>https://orcid.org/0000-0002-1021-6927</orcidid></addata></record> |
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subjects | Amino acids Crystals Debye temperature Density functional theory Enthalpy Entropy gamma‐aminobutyric acid (GABA) crystal Infrared analysis Infrared spectra Lattice vibration Mathematical analysis Monoclinic lattice Neurotransmitters normal mode assignment Phonons planar vibrational signature Raman spectra Raman spectroscopy solid‐state DFT Spectrum analysis Vertebrates γ-Aminobutyric acid |
title | Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid |
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