Loading…

Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid

The γ‐aminobutyric acid (GABA) is the most important inhibitory neurotransmitter in vertebrate central nervous systems. Taking full account of the measured X‐ray diffractogram of its stable monoclinic polymorph, we have performed density functional theory (DFT) calculations to analyze/understand its...

Full description

Saved in:
Bibliographic Details
Published in:Journal of Raman spectroscopy 2021-07, Vol.52 (7), p.1294-1307
Main Authors: Silva, José Barbosa, Costa, Gabriel, Silva, Mauricélio Bezerra, Costa, Stefane Nunes, Santos, Regina Cláudia Rodrigues, Sales, Francisco Adilson Matos, Valentini, Antoninho, Caetano, Ewerton Wagner Santos, Freire, Valder Nogueira
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3
cites cdi_FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3
container_end_page 1307
container_issue 7
container_start_page 1294
container_title Journal of Raman spectroscopy
container_volume 52
creator Silva, José Barbosa
Costa, Gabriel
Silva, Mauricélio Bezerra
Costa, Stefane Nunes
Santos, Regina Cláudia Rodrigues
Sales, Francisco Adilson Matos
Valentini, Antoninho
Caetano, Ewerton Wagner Santos
Freire, Valder Nogueira
description The γ‐aminobutyric acid (GABA) is the most important inhibitory neurotransmitter in vertebrate central nervous systems. Taking full account of the measured X‐ray diffractogram of its stable monoclinic polymorph, we have performed density functional theory (DFT) calculations to analyze/understand its infrared and Raman spectra considering its monoclinic polymorph, an isolated stabilized (120) plane, and a single GABA molecule. Besides, phonon dispersion/density of states, heat capacity, Debye temperature, and entropy/enthalpy/free energies were also obtained for the GABA monoclinic crystal. Vibrational signatures due to the GABA (120) planes are pointed out for the first time for several wavenumbers. The results obtained for the GABA monoclinic polymorph reinforce the need of dispersion‐corrected solid‐state calculations to describe the vibrational properties of molecular crystals instead of considering a single isolated molecule picture, even for wavenumbers larger than those usually associated with lattice modes. Measurements of the infrared and Raman spectra of the monoclinic form of the GABA crystal were analyzed through DFT calculations, obtaining its theoretical IR and Raman spectra. DFT calculations were also performed on a 2D GABA crystal and a single isolated neutral GABA molecule. The calculated spectra for the solid state shows the best agreement with the measured data, especially for wavenumbers smaller than 1300 cm−1. Some rich vibrational planar features were found as well.
doi_str_mv 10.1002/jrs.6134
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2624180251</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2624180251</sourcerecordid><originalsourceid>FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3</originalsourceid><addsrcrecordid>eNp10MtKAzEUBuAgCtYq-AgBNy6cmmQyt2UVrUpB8LYdMskZmzJNxiRFZufWnc_ok5hat64C5_84nPwIHVMyoYSw86Xzk5ymfAeNKKmKhGdZtotGJC2KhPAy30cH3i8JIVWV0xH6fNGNE0FbIzrse5DBWS9tP2BhFO4X1ljz_fHloBMB4sDZHlzQ4LFt8SqmstNGSzybXkzPsMBbHlkAbewrbDJtFrrRwboBG1jHyAnjVzoEcFisIsNCanWI9lrReTj6e8fo-frq6fImmd_Pbi-n80SyKuWJUDlXEsqmbKCClJV5JirJhayytk3TUlUFbxQrmMxaqRSolImCCNW0wGkhmnSMTrZ745Fva_ChXtq1i9_3NcsZpyVhGY3qdKtk7MM7aOve6ZVwQ01JvSm6jkXXm6IjTbb0XXcw_Ovqu4fHX_8Du8GF9w</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2624180251</pqid></control><display><type>article</type><title>Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid</title><source>Wiley-Blackwell Read &amp; Publish Collection</source><creator>Silva, José Barbosa ; Costa, Gabriel ; Silva, Mauricélio Bezerra ; Costa, Stefane Nunes ; Santos, Regina Cláudia Rodrigues ; Sales, Francisco Adilson Matos ; Valentini, Antoninho ; Caetano, Ewerton Wagner Santos ; Freire, Valder Nogueira</creator><creatorcontrib>Silva, José Barbosa ; Costa, Gabriel ; Silva, Mauricélio Bezerra ; Costa, Stefane Nunes ; Santos, Regina Cláudia Rodrigues ; Sales, Francisco Adilson Matos ; Valentini, Antoninho ; Caetano, Ewerton Wagner Santos ; Freire, Valder Nogueira</creatorcontrib><description>The γ‐aminobutyric acid (GABA) is the most important inhibitory neurotransmitter in vertebrate central nervous systems. Taking full account of the measured X‐ray diffractogram of its stable monoclinic polymorph, we have performed density functional theory (DFT) calculations to analyze/understand its infrared and Raman spectra considering its monoclinic polymorph, an isolated stabilized (120) plane, and a single GABA molecule. Besides, phonon dispersion/density of states, heat capacity, Debye temperature, and entropy/enthalpy/free energies were also obtained for the GABA monoclinic crystal. Vibrational signatures due to the GABA (120) planes are pointed out for the first time for several wavenumbers. The results obtained for the GABA monoclinic polymorph reinforce the need of dispersion‐corrected solid‐state calculations to describe the vibrational properties of molecular crystals instead of considering a single isolated molecule picture, even for wavenumbers larger than those usually associated with lattice modes. Measurements of the infrared and Raman spectra of the monoclinic form of the GABA crystal were analyzed through DFT calculations, obtaining its theoretical IR and Raman spectra. DFT calculations were also performed on a 2D GABA crystal and a single isolated neutral GABA molecule. The calculated spectra for the solid state shows the best agreement with the measured data, especially for wavenumbers smaller than 1300 cm−1. Some rich vibrational planar features were found as well.</description><identifier>ISSN: 0377-0486</identifier><identifier>EISSN: 1097-4555</identifier><identifier>DOI: 10.1002/jrs.6134</identifier><language>eng</language><publisher>Bognor Regis: Wiley Subscription Services, Inc</publisher><subject>Amino acids ; Crystals ; Debye temperature ; Density functional theory ; Enthalpy ; Entropy ; gamma‐aminobutyric acid (GABA) crystal ; Infrared analysis ; Infrared spectra ; Lattice vibration ; Mathematical analysis ; Monoclinic lattice ; Neurotransmitters ; normal mode assignment ; Phonons ; planar vibrational signature ; Raman spectra ; Raman spectroscopy ; solid‐state DFT ; Spectrum analysis ; Vertebrates ; γ-Aminobutyric acid</subject><ispartof>Journal of Raman spectroscopy, 2021-07, Vol.52 (7), p.1294-1307</ispartof><rights>2021 John Wiley &amp; Sons, Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3</citedby><cites>FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3</cites><orcidid>0000-0001-7941-3956 ; 0000-0001-7867-3908 ; 0000-0002-7019-6155 ; 0000-0002-1021-6927</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Silva, José Barbosa</creatorcontrib><creatorcontrib>Costa, Gabriel</creatorcontrib><creatorcontrib>Silva, Mauricélio Bezerra</creatorcontrib><creatorcontrib>Costa, Stefane Nunes</creatorcontrib><creatorcontrib>Santos, Regina Cláudia Rodrigues</creatorcontrib><creatorcontrib>Sales, Francisco Adilson Matos</creatorcontrib><creatorcontrib>Valentini, Antoninho</creatorcontrib><creatorcontrib>Caetano, Ewerton Wagner Santos</creatorcontrib><creatorcontrib>Freire, Valder Nogueira</creatorcontrib><title>Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid</title><title>Journal of Raman spectroscopy</title><description>The γ‐aminobutyric acid (GABA) is the most important inhibitory neurotransmitter in vertebrate central nervous systems. Taking full account of the measured X‐ray diffractogram of its stable monoclinic polymorph, we have performed density functional theory (DFT) calculations to analyze/understand its infrared and Raman spectra considering its monoclinic polymorph, an isolated stabilized (120) plane, and a single GABA molecule. Besides, phonon dispersion/density of states, heat capacity, Debye temperature, and entropy/enthalpy/free energies were also obtained for the GABA monoclinic crystal. Vibrational signatures due to the GABA (120) planes are pointed out for the first time for several wavenumbers. The results obtained for the GABA monoclinic polymorph reinforce the need of dispersion‐corrected solid‐state calculations to describe the vibrational properties of molecular crystals instead of considering a single isolated molecule picture, even for wavenumbers larger than those usually associated with lattice modes. Measurements of the infrared and Raman spectra of the monoclinic form of the GABA crystal were analyzed through DFT calculations, obtaining its theoretical IR and Raman spectra. DFT calculations were also performed on a 2D GABA crystal and a single isolated neutral GABA molecule. The calculated spectra for the solid state shows the best agreement with the measured data, especially for wavenumbers smaller than 1300 cm−1. Some rich vibrational planar features were found as well.</description><subject>Amino acids</subject><subject>Crystals</subject><subject>Debye temperature</subject><subject>Density functional theory</subject><subject>Enthalpy</subject><subject>Entropy</subject><subject>gamma‐aminobutyric acid (GABA) crystal</subject><subject>Infrared analysis</subject><subject>Infrared spectra</subject><subject>Lattice vibration</subject><subject>Mathematical analysis</subject><subject>Monoclinic lattice</subject><subject>Neurotransmitters</subject><subject>normal mode assignment</subject><subject>Phonons</subject><subject>planar vibrational signature</subject><subject>Raman spectra</subject><subject>Raman spectroscopy</subject><subject>solid‐state DFT</subject><subject>Spectrum analysis</subject><subject>Vertebrates</subject><subject>γ-Aminobutyric acid</subject><issn>0377-0486</issn><issn>1097-4555</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp10MtKAzEUBuAgCtYq-AgBNy6cmmQyt2UVrUpB8LYdMskZmzJNxiRFZufWnc_ok5hat64C5_84nPwIHVMyoYSw86Xzk5ymfAeNKKmKhGdZtotGJC2KhPAy30cH3i8JIVWV0xH6fNGNE0FbIzrse5DBWS9tP2BhFO4X1ljz_fHloBMB4sDZHlzQ4LFt8SqmstNGSzybXkzPsMBbHlkAbewrbDJtFrrRwboBG1jHyAnjVzoEcFisIsNCanWI9lrReTj6e8fo-frq6fImmd_Pbi-n80SyKuWJUDlXEsqmbKCClJV5JirJhayytk3TUlUFbxQrmMxaqRSolImCCNW0wGkhmnSMTrZ745Fva_ChXtq1i9_3NcsZpyVhGY3qdKtk7MM7aOve6ZVwQ01JvSm6jkXXm6IjTbb0XXcw_Ovqu4fHX_8Du8GF9w</recordid><startdate>202107</startdate><enddate>202107</enddate><creator>Silva, José Barbosa</creator><creator>Costa, Gabriel</creator><creator>Silva, Mauricélio Bezerra</creator><creator>Costa, Stefane Nunes</creator><creator>Santos, Regina Cláudia Rodrigues</creator><creator>Sales, Francisco Adilson Matos</creator><creator>Valentini, Antoninho</creator><creator>Caetano, Ewerton Wagner Santos</creator><creator>Freire, Valder Nogueira</creator><general>Wiley Subscription Services, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>7U9</scope><scope>8BQ</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>H94</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0001-7941-3956</orcidid><orcidid>https://orcid.org/0000-0001-7867-3908</orcidid><orcidid>https://orcid.org/0000-0002-7019-6155</orcidid><orcidid>https://orcid.org/0000-0002-1021-6927</orcidid></search><sort><creationdate>202107</creationdate><title>Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid</title><author>Silva, José Barbosa ; Costa, Gabriel ; Silva, Mauricélio Bezerra ; Costa, Stefane Nunes ; Santos, Regina Cláudia Rodrigues ; Sales, Francisco Adilson Matos ; Valentini, Antoninho ; Caetano, Ewerton Wagner Santos ; Freire, Valder Nogueira</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Amino acids</topic><topic>Crystals</topic><topic>Debye temperature</topic><topic>Density functional theory</topic><topic>Enthalpy</topic><topic>Entropy</topic><topic>gamma‐aminobutyric acid (GABA) crystal</topic><topic>Infrared analysis</topic><topic>Infrared spectra</topic><topic>Lattice vibration</topic><topic>Mathematical analysis</topic><topic>Monoclinic lattice</topic><topic>Neurotransmitters</topic><topic>normal mode assignment</topic><topic>Phonons</topic><topic>planar vibrational signature</topic><topic>Raman spectra</topic><topic>Raman spectroscopy</topic><topic>solid‐state DFT</topic><topic>Spectrum analysis</topic><topic>Vertebrates</topic><topic>γ-Aminobutyric acid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Silva, José Barbosa</creatorcontrib><creatorcontrib>Costa, Gabriel</creatorcontrib><creatorcontrib>Silva, Mauricélio Bezerra</creatorcontrib><creatorcontrib>Costa, Stefane Nunes</creatorcontrib><creatorcontrib>Santos, Regina Cláudia Rodrigues</creatorcontrib><creatorcontrib>Sales, Francisco Adilson Matos</creatorcontrib><creatorcontrib>Valentini, Antoninho</creatorcontrib><creatorcontrib>Caetano, Ewerton Wagner Santos</creatorcontrib><creatorcontrib>Freire, Valder Nogueira</creatorcontrib><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics &amp; Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical &amp; Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology &amp; Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts – Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of Raman spectroscopy</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Silva, José Barbosa</au><au>Costa, Gabriel</au><au>Silva, Mauricélio Bezerra</au><au>Costa, Stefane Nunes</au><au>Santos, Regina Cláudia Rodrigues</au><au>Sales, Francisco Adilson Matos</au><au>Valentini, Antoninho</au><au>Caetano, Ewerton Wagner Santos</au><au>Freire, Valder Nogueira</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid</atitle><jtitle>Journal of Raman spectroscopy</jtitle><date>2021-07</date><risdate>2021</risdate><volume>52</volume><issue>7</issue><spage>1294</spage><epage>1307</epage><pages>1294-1307</pages><issn>0377-0486</issn><eissn>1097-4555</eissn><abstract>The γ‐aminobutyric acid (GABA) is the most important inhibitory neurotransmitter in vertebrate central nervous systems. Taking full account of the measured X‐ray diffractogram of its stable monoclinic polymorph, we have performed density functional theory (DFT) calculations to analyze/understand its infrared and Raman spectra considering its monoclinic polymorph, an isolated stabilized (120) plane, and a single GABA molecule. Besides, phonon dispersion/density of states, heat capacity, Debye temperature, and entropy/enthalpy/free energies were also obtained for the GABA monoclinic crystal. Vibrational signatures due to the GABA (120) planes are pointed out for the first time for several wavenumbers. The results obtained for the GABA monoclinic polymorph reinforce the need of dispersion‐corrected solid‐state calculations to describe the vibrational properties of molecular crystals instead of considering a single isolated molecule picture, even for wavenumbers larger than those usually associated with lattice modes. Measurements of the infrared and Raman spectra of the monoclinic form of the GABA crystal were analyzed through DFT calculations, obtaining its theoretical IR and Raman spectra. DFT calculations were also performed on a 2D GABA crystal and a single isolated neutral GABA molecule. The calculated spectra for the solid state shows the best agreement with the measured data, especially for wavenumbers smaller than 1300 cm−1. Some rich vibrational planar features were found as well.</abstract><cop>Bognor Regis</cop><pub>Wiley Subscription Services, Inc</pub><doi>10.1002/jrs.6134</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0001-7941-3956</orcidid><orcidid>https://orcid.org/0000-0001-7867-3908</orcidid><orcidid>https://orcid.org/0000-0002-7019-6155</orcidid><orcidid>https://orcid.org/0000-0002-1021-6927</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 0377-0486
ispartof Journal of Raman spectroscopy, 2021-07, Vol.52 (7), p.1294-1307
issn 0377-0486
1097-4555
language eng
recordid cdi_proquest_journals_2624180251
source Wiley-Blackwell Read & Publish Collection
subjects Amino acids
Crystals
Debye temperature
Density functional theory
Enthalpy
Entropy
gamma‐aminobutyric acid (GABA) crystal
Infrared analysis
Infrared spectra
Lattice vibration
Mathematical analysis
Monoclinic lattice
Neurotransmitters
normal mode assignment
Phonons
planar vibrational signature
Raman spectra
Raman spectroscopy
solid‐state DFT
Spectrum analysis
Vertebrates
γ-Aminobutyric acid
title Vibrational spectroscopy and phonon‐related properties of monoclinic GABA, a non‐proteinogenic inhibitory neurotransmitter amino acid
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-26T00%3A24%3A27IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Vibrational%20spectroscopy%20and%20phonon%E2%80%90related%20properties%20of%20monoclinic%20GABA,%20a%20non%E2%80%90proteinogenic%20inhibitory%20neurotransmitter%20amino%20acid&rft.jtitle=Journal%20of%20Raman%20spectroscopy&rft.au=Silva,%20Jos%C3%A9%20Barbosa&rft.date=2021-07&rft.volume=52&rft.issue=7&rft.spage=1294&rft.epage=1307&rft.pages=1294-1307&rft.issn=0377-0486&rft.eissn=1097-4555&rft_id=info:doi/10.1002/jrs.6134&rft_dat=%3Cproquest_cross%3E2624180251%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c2934-ad64dce8b8be9e32865a9c4ac95ff338d974bd272c5fcdded32a70adbfe417ab3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2624180251&rft_id=info:pmid/&rfr_iscdi=true