A stochastic inspection about genetic variants of Covid-19 circulating in Brazil during 2020

In this article, we investigate the existence of genetic variants of Covid-19 circulating in Brazil in the 2020 outbreak. We apply the findings of [1] about the Partition Markov Model (PMM) with gap in genetic sequences of Covid-19, see also [2]. Using a metric on those models, we define the proximi...

Full description

Saved in:
Bibliographic Details
Main Authors: García, Jesús E., González-López, V. A., Tasca, G. H.
Format: Conference Proceeding
Language:English
Subjects:
Coronaviruses
COVID-19
Gene sequencing
Inspection
Markov chains
Outbreaks
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites
container_end_page
container_issue 1
container_start_page
container_title
container_volume 2425
creator García, Jesús E.
González-López, V. A.
Tasca, G. H.
description In this article, we investigate the existence of genetic variants of Covid-19 circulating in Brazil in the 2020 outbreak. We apply the findings of [1] about the Partition Markov Model (PMM) with gap in genetic sequences of Covid-19, see also [2]. Using a metric on those models, we define the proximity between complete genomic sequences of the NCBI base. We see that two groups can be identified among the five available sequences that come from Brazil. To verify our claims, we implement a more complete comparison consisting of fourteen sequences, including sequences from Spain and Italy. Such comparison indicates the existence of two groups, where each group includes one from the previously identified Brazilian groups. Then, we found at least two variants of Covid-19 circulating in Brazil during the 2020 outbreak.
doi_str_mv 10.1063/5.0081337
format conference_proceeding
fullrecord <record><control><sourceid>proquest_scita</sourceid><recordid>TN_cdi_proquest_journals_2647435886</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2647435886</sourcerecordid><originalsourceid>FETCH-LOGICAL-p637-2114e5fc2045454652fb85caca87f5c1c6e6dae82e2cd7f299f99d372ba543ab3</originalsourceid><addsrcrecordid>eNotUE1LAzEUDKJgrR78BwFvwtZ8J3usxS8oeOnBgxCy2aSm1M2aZAv6692l5R0G3sybxwwAtxgtMBL0gS8QUphSeQZmmHNcSYHFOZghVLOKMPpxCa5y3iFEainVDHwuYS7RfplcgoWhy72zJcQOmiYOBW5d5ybiYFIwXckweriKh9BWuIY2JDvsTQnddryEj8n8hT1shzQtCCLoGlx4s8_u5oRzsHl-2qxeq_X7y9tqua56QWVFMGaOe0sQ4-MITnyjuDXWKOm5xVY40RqniCO2lZ7Uta_rlkrSGM6oaegc3B1t-xR_BpeL3sUhdeNHTQSTjHKlxKi6P6qyDcVMGXWfwrdJvxojPZWnuT6VR_8BVIJgXg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>conference_proceeding</recordtype><pqid>2647435886</pqid></control><display><type>conference_proceeding</type><title>A stochastic inspection about genetic variants of Covid-19 circulating in Brazil during 2020</title><source>American Institute of Physics:Jisc Collections:Transitional Journals Agreement 2021-23 (Reading list)</source><creator>García, Jesús E. ; González-López, V. A. ; Tasca, G. H.</creator><contributor>Simos, Theodore ; Tsitouras, Charalambos</contributor><creatorcontrib>García, Jesús E. ; González-López, V. A. ; Tasca, G. H. ; Simos, Theodore ; Tsitouras, Charalambos</creatorcontrib><description>In this article, we investigate the existence of genetic variants of Covid-19 circulating in Brazil in the 2020 outbreak. We apply the findings of [1] about the Partition Markov Model (PMM) with gap in genetic sequences of Covid-19, see also [2]. Using a metric on those models, we define the proximity between complete genomic sequences of the NCBI base. We see that two groups can be identified among the five available sequences that come from Brazil. To verify our claims, we implement a more complete comparison consisting of fourteen sequences, including sequences from Spain and Italy. Such comparison indicates the existence of two groups, where each group includes one from the previously identified Brazilian groups. Then, we found at least two variants of Covid-19 circulating in Brazil during the 2020 outbreak.</description><identifier>ISSN: 0094-243X</identifier><identifier>EISSN: 1551-7616</identifier><identifier>DOI: 10.1063/5.0081337</identifier><identifier>CODEN: APCPCS</identifier><language>eng</language><publisher>Melville: American Institute of Physics</publisher><subject>Coronaviruses ; COVID-19 ; Gene sequencing ; Inspection ; Markov chains ; Outbreaks</subject><ispartof>AIP Conference Proceedings, 2022, Vol.2425 (1)</ispartof><rights>Author(s)</rights><rights>2022 Author(s). Published by AIP Publishing.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>309,310,314,780,784,789,790,23930,23931,25140,27924,27925</link.rule.ids></links><search><contributor>Simos, Theodore</contributor><contributor>Tsitouras, Charalambos</contributor><creatorcontrib>García, Jesús E.</creatorcontrib><creatorcontrib>González-López, V. A.</creatorcontrib><creatorcontrib>Tasca, G. H.</creatorcontrib><title>A stochastic inspection about genetic variants of Covid-19 circulating in Brazil during 2020</title><title>AIP Conference Proceedings</title><description>In this article, we investigate the existence of genetic variants of Covid-19 circulating in Brazil in the 2020 outbreak. We apply the findings of [1] about the Partition Markov Model (PMM) with gap in genetic sequences of Covid-19, see also [2]. Using a metric on those models, we define the proximity between complete genomic sequences of the NCBI base. We see that two groups can be identified among the five available sequences that come from Brazil. To verify our claims, we implement a more complete comparison consisting of fourteen sequences, including sequences from Spain and Italy. Such comparison indicates the existence of two groups, where each group includes one from the previously identified Brazilian groups. Then, we found at least two variants of Covid-19 circulating in Brazil during the 2020 outbreak.</description><subject>Coronaviruses</subject><subject>COVID-19</subject><subject>Gene sequencing</subject><subject>Inspection</subject><subject>Markov chains</subject><subject>Outbreaks</subject><issn>0094-243X</issn><issn>1551-7616</issn><fulltext>true</fulltext><rsrctype>conference_proceeding</rsrctype><creationdate>2022</creationdate><recordtype>conference_proceeding</recordtype><recordid>eNotUE1LAzEUDKJgrR78BwFvwtZ8J3usxS8oeOnBgxCy2aSm1M2aZAv6692l5R0G3sybxwwAtxgtMBL0gS8QUphSeQZmmHNcSYHFOZghVLOKMPpxCa5y3iFEainVDHwuYS7RfplcgoWhy72zJcQOmiYOBW5d5ybiYFIwXckweriKh9BWuIY2JDvsTQnddryEj8n8hT1shzQtCCLoGlx4s8_u5oRzsHl-2qxeq_X7y9tqua56QWVFMGaOe0sQ4-MITnyjuDXWKOm5xVY40RqniCO2lZ7Uta_rlkrSGM6oaegc3B1t-xR_BpeL3sUhdeNHTQSTjHKlxKi6P6qyDcVMGXWfwrdJvxojPZWnuT6VR_8BVIJgXg</recordid><startdate>20220406</startdate><enddate>20220406</enddate><creator>García, Jesús E.</creator><creator>González-López, V. A.</creator><creator>Tasca, G. H.</creator><general>American Institute of Physics</general><scope>8FD</scope><scope>H8D</scope><scope>L7M</scope></search><sort><creationdate>20220406</creationdate><title>A stochastic inspection about genetic variants of Covid-19 circulating in Brazil during 2020</title><author>García, Jesús E. ; González-López, V. A. ; Tasca, G. H.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p637-2114e5fc2045454652fb85caca87f5c1c6e6dae82e2cd7f299f99d372ba543ab3</frbrgroupid><rsrctype>conference_proceedings</rsrctype><prefilter>conference_proceedings</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Coronaviruses</topic><topic>COVID-19</topic><topic>Gene sequencing</topic><topic>Inspection</topic><topic>Markov chains</topic><topic>Outbreaks</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>García, Jesús E.</creatorcontrib><creatorcontrib>González-López, V. A.</creatorcontrib><creatorcontrib>Tasca, G. H.</creatorcontrib><collection>Technology Research Database</collection><collection>Aerospace Database</collection><collection>Advanced Technologies Database with Aerospace</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>García, Jesús E.</au><au>González-López, V. A.</au><au>Tasca, G. H.</au><au>Simos, Theodore</au><au>Tsitouras, Charalambos</au><format>book</format><genre>proceeding</genre><ristype>CONF</ristype><atitle>A stochastic inspection about genetic variants of Covid-19 circulating in Brazil during 2020</atitle><btitle>AIP Conference Proceedings</btitle><date>2022-04-06</date><risdate>2022</risdate><volume>2425</volume><issue>1</issue><issn>0094-243X</issn><eissn>1551-7616</eissn><coden>APCPCS</coden><abstract>In this article, we investigate the existence of genetic variants of Covid-19 circulating in Brazil in the 2020 outbreak. We apply the findings of [1] about the Partition Markov Model (PMM) with gap in genetic sequences of Covid-19, see also [2]. Using a metric on those models, we define the proximity between complete genomic sequences of the NCBI base. We see that two groups can be identified among the five available sequences that come from Brazil. To verify our claims, we implement a more complete comparison consisting of fourteen sequences, including sequences from Spain and Italy. Such comparison indicates the existence of two groups, where each group includes one from the previously identified Brazilian groups. Then, we found at least two variants of Covid-19 circulating in Brazil during the 2020 outbreak.</abstract><cop>Melville</cop><pub>American Institute of Physics</pub><doi>10.1063/5.0081337</doi><tpages>4</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0094-243X
ispartof AIP Conference Proceedings, 2022, Vol.2425 (1)
issn 0094-243X
1551-7616
language eng
recordid cdi_proquest_journals_2647435886
source American Institute of Physics:Jisc Collections:Transitional Journals Agreement 2021-23 (Reading list)
subjects Coronaviruses
COVID-19
Gene sequencing
Inspection
Markov chains
Outbreaks
title A stochastic inspection about genetic variants of Covid-19 circulating in Brazil during 2020
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-29T03%3A56%3A34IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_scita&rft_val_fmt=info:ofi/fmt:kev:mtx:book&rft.genre=proceeding&rft.atitle=A%20stochastic%20inspection%20about%20genetic%20variants%20of%20Covid-19%20circulating%20in%20Brazil%20during%202020&rft.btitle=AIP%20Conference%20Proceedings&rft.au=Garc%C3%ADa,%20Jes%C3%BAs%20E.&rft.date=2022-04-06&rft.volume=2425&rft.issue=1&rft.issn=0094-243X&rft.eissn=1551-7616&rft.coden=APCPCS&rft_id=info:doi/10.1063/5.0081337&rft_dat=%3Cproquest_scita%3E2647435886%3C/proquest_scita%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-p637-2114e5fc2045454652fb85caca87f5c1c6e6dae82e2cd7f299f99d372ba543ab3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2647435886&rft_id=info:pmid/&rfr_iscdi=true