Loading…

Medical Image Segmentation Review: The success of U-Net

Automatic medical image segmentation is a crucial topic in the medical domain and successively a critical counterpart in the computer-aided diagnosis paradigm. U-Net is the most widespread image segmentation architecture due to its flexibility, optimized modular design, and success in all medical im...

Full description

Saved in:
Bibliographic Details
Published in:arXiv.org 2022-11
Main Authors: Azad, Reza, Aghdam, Ehsan Khodapanah, Rauland, Amelie, Jia, Yiwei, Atlas Haddadi Avval, Bozorgpour, Afshin, Karimijafarbigloo, Sanaz, Cohen, Joseph Paul, Adeli, Ehsan, Merhof, Dorit
Format: Article
Language:English
Subjects:
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites
container_end_page
container_issue
container_start_page
container_title arXiv.org
container_volume
creator Azad, Reza
Aghdam, Ehsan Khodapanah
Rauland, Amelie
Jia, Yiwei
Atlas Haddadi Avval
Bozorgpour, Afshin
Karimijafarbigloo, Sanaz
Cohen, Joseph Paul
Adeli, Ehsan
Merhof, Dorit
description Automatic medical image segmentation is a crucial topic in the medical domain and successively a critical counterpart in the computer-aided diagnosis paradigm. U-Net is the most widespread image segmentation architecture due to its flexibility, optimized modular design, and success in all medical image modalities. Over the years, the U-Net model achieved tremendous attention from academic and industrial researchers. Several extensions of this network have been proposed to address the scale and complexity created by medical tasks. Addressing the deficiency of the naive U-Net model is the foremost step for vendors to utilize the proper U-Net variant model for their business. Having a compendium of different variants in one place makes it easier for builders to identify the relevant research. Also, for ML researchers it will help them understand the challenges of the biological tasks that challenge the model. To address this, we discuss the practical aspects of the U-Net model and suggest a taxonomy to categorize each network variant. Moreover, to measure the performance of these strategies in a clinical application, we propose fair evaluations of some unique and famous designs on well-known datasets. We provide a comprehensive implementation library with trained models for future research. In addition, for ease of future studies, we created an online list of U-Net papers with their possible official implementation. All information is gathered in https://github.com/NITR098/Awesome-U-Net repository.
format article
fullrecord <record><control><sourceid>proquest</sourceid><recordid>TN_cdi_proquest_journals_2741132737</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2741132737</sourcerecordid><originalsourceid>FETCH-proquest_journals_27411327373</originalsourceid><addsrcrecordid>eNpjYuA0MjY21LUwMTLiYOAtLs4yMDAwMjM3MjU15mQw901NyUxOzFHwzE1MT1UITk3PTc0rSSzJzM9TCEoty0wtt1IIyUhVKC5NTk4tLlbIT1MI1fVLLeFhYE1LzClO5YXS3AzKbq4hzh66BUX5haWpxSXxWfmlRXlAqXgjcxNDQ2Mjc2NzY-JUAQCYdzSq</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2741132737</pqid></control><display><type>article</type><title>Medical Image Segmentation Review: The success of U-Net</title><source>Publicly Available Content Database</source><creator>Azad, Reza ; Aghdam, Ehsan Khodapanah ; Rauland, Amelie ; Jia, Yiwei ; Atlas Haddadi Avval ; Bozorgpour, Afshin ; Karimijafarbigloo, Sanaz ; Cohen, Joseph Paul ; Adeli, Ehsan ; Merhof, Dorit</creator><creatorcontrib>Azad, Reza ; Aghdam, Ehsan Khodapanah ; Rauland, Amelie ; Jia, Yiwei ; Atlas Haddadi Avval ; Bozorgpour, Afshin ; Karimijafarbigloo, Sanaz ; Cohen, Joseph Paul ; Adeli, Ehsan ; Merhof, Dorit</creatorcontrib><description>Automatic medical image segmentation is a crucial topic in the medical domain and successively a critical counterpart in the computer-aided diagnosis paradigm. U-Net is the most widespread image segmentation architecture due to its flexibility, optimized modular design, and success in all medical image modalities. Over the years, the U-Net model achieved tremendous attention from academic and industrial researchers. Several extensions of this network have been proposed to address the scale and complexity created by medical tasks. Addressing the deficiency of the naive U-Net model is the foremost step for vendors to utilize the proper U-Net variant model for their business. Having a compendium of different variants in one place makes it easier for builders to identify the relevant research. Also, for ML researchers it will help them understand the challenges of the biological tasks that challenge the model. To address this, we discuss the practical aspects of the U-Net model and suggest a taxonomy to categorize each network variant. Moreover, to measure the performance of these strategies in a clinical application, we propose fair evaluations of some unique and famous designs on well-known datasets. We provide a comprehensive implementation library with trained models for future research. In addition, for ease of future studies, we created an online list of U-Net papers with their possible official implementation. All information is gathered in https://github.com/NITR098/Awesome-U-Net repository.</description><identifier>EISSN: 2331-8422</identifier><language>eng</language><publisher>Ithaca: Cornell University Library, arXiv.org</publisher><subject>Design optimization ; Image segmentation ; Medical imaging ; Modular design ; Task complexity ; Taxonomy</subject><ispartof>arXiv.org, 2022-11</ispartof><rights>2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.proquest.com/docview/2741132737?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>780,784,25753,37012,44590</link.rule.ids></links><search><creatorcontrib>Azad, Reza</creatorcontrib><creatorcontrib>Aghdam, Ehsan Khodapanah</creatorcontrib><creatorcontrib>Rauland, Amelie</creatorcontrib><creatorcontrib>Jia, Yiwei</creatorcontrib><creatorcontrib>Atlas Haddadi Avval</creatorcontrib><creatorcontrib>Bozorgpour, Afshin</creatorcontrib><creatorcontrib>Karimijafarbigloo, Sanaz</creatorcontrib><creatorcontrib>Cohen, Joseph Paul</creatorcontrib><creatorcontrib>Adeli, Ehsan</creatorcontrib><creatorcontrib>Merhof, Dorit</creatorcontrib><title>Medical Image Segmentation Review: The success of U-Net</title><title>arXiv.org</title><description>Automatic medical image segmentation is a crucial topic in the medical domain and successively a critical counterpart in the computer-aided diagnosis paradigm. U-Net is the most widespread image segmentation architecture due to its flexibility, optimized modular design, and success in all medical image modalities. Over the years, the U-Net model achieved tremendous attention from academic and industrial researchers. Several extensions of this network have been proposed to address the scale and complexity created by medical tasks. Addressing the deficiency of the naive U-Net model is the foremost step for vendors to utilize the proper U-Net variant model for their business. Having a compendium of different variants in one place makes it easier for builders to identify the relevant research. Also, for ML researchers it will help them understand the challenges of the biological tasks that challenge the model. To address this, we discuss the practical aspects of the U-Net model and suggest a taxonomy to categorize each network variant. Moreover, to measure the performance of these strategies in a clinical application, we propose fair evaluations of some unique and famous designs on well-known datasets. We provide a comprehensive implementation library with trained models for future research. In addition, for ease of future studies, we created an online list of U-Net papers with their possible official implementation. All information is gathered in https://github.com/NITR098/Awesome-U-Net repository.</description><subject>Design optimization</subject><subject>Image segmentation</subject><subject>Medical imaging</subject><subject>Modular design</subject><subject>Task complexity</subject><subject>Taxonomy</subject><issn>2331-8422</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNpjYuA0MjY21LUwMTLiYOAtLs4yMDAwMjM3MjU15mQw901NyUxOzFHwzE1MT1UITk3PTc0rSSzJzM9TCEoty0wtt1IIyUhVKC5NTk4tLlbIT1MI1fVLLeFhYE1LzClO5YXS3AzKbq4hzh66BUX5haWpxSXxWfmlRXlAqXgjcxNDQ2Mjc2NzY-JUAQCYdzSq</recordid><startdate>20221127</startdate><enddate>20221127</enddate><creator>Azad, Reza</creator><creator>Aghdam, Ehsan Khodapanah</creator><creator>Rauland, Amelie</creator><creator>Jia, Yiwei</creator><creator>Atlas Haddadi Avval</creator><creator>Bozorgpour, Afshin</creator><creator>Karimijafarbigloo, Sanaz</creator><creator>Cohen, Joseph Paul</creator><creator>Adeli, Ehsan</creator><creator>Merhof, Dorit</creator><general>Cornell University Library, arXiv.org</general><scope>8FE</scope><scope>8FG</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>M7S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope></search><sort><creationdate>20221127</creationdate><title>Medical Image Segmentation Review: The success of U-Net</title><author>Azad, Reza ; Aghdam, Ehsan Khodapanah ; Rauland, Amelie ; Jia, Yiwei ; Atlas Haddadi Avval ; Bozorgpour, Afshin ; Karimijafarbigloo, Sanaz ; Cohen, Joseph Paul ; Adeli, Ehsan ; Merhof, Dorit</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-proquest_journals_27411327373</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Design optimization</topic><topic>Image segmentation</topic><topic>Medical imaging</topic><topic>Modular design</topic><topic>Task complexity</topic><topic>Taxonomy</topic><toplevel>online_resources</toplevel><creatorcontrib>Azad, Reza</creatorcontrib><creatorcontrib>Aghdam, Ehsan Khodapanah</creatorcontrib><creatorcontrib>Rauland, Amelie</creatorcontrib><creatorcontrib>Jia, Yiwei</creatorcontrib><creatorcontrib>Atlas Haddadi Avval</creatorcontrib><creatorcontrib>Bozorgpour, Afshin</creatorcontrib><creatorcontrib>Karimijafarbigloo, Sanaz</creatorcontrib><creatorcontrib>Cohen, Joseph Paul</creatorcontrib><creatorcontrib>Adeli, Ehsan</creatorcontrib><creatorcontrib>Merhof, Dorit</creatorcontrib><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>Materials Science &amp; Engineering Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Engineering Collection</collection><collection>Engineering Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering collection</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Azad, Reza</au><au>Aghdam, Ehsan Khodapanah</au><au>Rauland, Amelie</au><au>Jia, Yiwei</au><au>Atlas Haddadi Avval</au><au>Bozorgpour, Afshin</au><au>Karimijafarbigloo, Sanaz</au><au>Cohen, Joseph Paul</au><au>Adeli, Ehsan</au><au>Merhof, Dorit</au><format>book</format><genre>document</genre><ristype>GEN</ristype><atitle>Medical Image Segmentation Review: The success of U-Net</atitle><jtitle>arXiv.org</jtitle><date>2022-11-27</date><risdate>2022</risdate><eissn>2331-8422</eissn><abstract>Automatic medical image segmentation is a crucial topic in the medical domain and successively a critical counterpart in the computer-aided diagnosis paradigm. U-Net is the most widespread image segmentation architecture due to its flexibility, optimized modular design, and success in all medical image modalities. Over the years, the U-Net model achieved tremendous attention from academic and industrial researchers. Several extensions of this network have been proposed to address the scale and complexity created by medical tasks. Addressing the deficiency of the naive U-Net model is the foremost step for vendors to utilize the proper U-Net variant model for their business. Having a compendium of different variants in one place makes it easier for builders to identify the relevant research. Also, for ML researchers it will help them understand the challenges of the biological tasks that challenge the model. To address this, we discuss the practical aspects of the U-Net model and suggest a taxonomy to categorize each network variant. Moreover, to measure the performance of these strategies in a clinical application, we propose fair evaluations of some unique and famous designs on well-known datasets. We provide a comprehensive implementation library with trained models for future research. In addition, for ease of future studies, we created an online list of U-Net papers with their possible official implementation. All information is gathered in https://github.com/NITR098/Awesome-U-Net repository.</abstract><cop>Ithaca</cop><pub>Cornell University Library, arXiv.org</pub><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier EISSN: 2331-8422
ispartof arXiv.org, 2022-11
issn 2331-8422
language eng
recordid cdi_proquest_journals_2741132737
source Publicly Available Content Database
subjects Design optimization
Image segmentation
Medical imaging
Modular design
Task complexity
Taxonomy
title Medical Image Segmentation Review: The success of U-Net
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-29T19%3A20%3A01IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest&rft_val_fmt=info:ofi/fmt:kev:mtx:book&rft.genre=document&rft.atitle=Medical%20Image%20Segmentation%20Review:%20The%20success%20of%20U-Net&rft.jtitle=arXiv.org&rft.au=Azad,%20Reza&rft.date=2022-11-27&rft.eissn=2331-8422&rft_id=info:doi/&rft_dat=%3Cproquest%3E2741132737%3C/proquest%3E%3Cgrp_id%3Ecdi_FETCH-proquest_journals_27411327373%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2741132737&rft_id=info:pmid/&rfr_iscdi=true