Guidelines for reporting molecular typing data through EFSA's Data Collection Framework

The European Food Safety Authority (EFSA) received the mandate from the European Commission (EC), in accordance with Article 31 of Regulation (EC) No. 178/2002, to collect data on the molecular testing of food‐borne pathogens such as Salmonella, Listeria monocytogenes and Shiga toxin‐producing Esche...

Full description

Saved in:
Bibliographic Details
Published in:EFSA supporting publications 2019-01, Vol.16 (1), p.n/a
Main Authors: Delfino, Alessandro, Pasinato, Luca, Rizzi, Valentina, Stoicescu, Anca‐Violeta
Format: Article
Language:English
Subjects:
Animals
Data collection
E coli
Epidemiology
Extensible Markup Language
Food
Food contamination
Health risks
Shiga toxin
Toxins
Typing
Citations: Items that this one cites
Online Access:Request full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites cdi_FETCH-LOGICAL-c171E-53564f14b924ac1999f7f3b66cfe2b791c6135bec5893e0f141ee771da4118d93
container_end_page n/a
container_issue 1
container_start_page
container_title EFSA supporting publications
container_volume 16
creator Delfino, Alessandro
Pasinato, Luca
Rizzi, Valentina
Stoicescu, Anca‐Violeta
description The European Food Safety Authority (EFSA) received the mandate from the European Commission (EC), in accordance with Article 31 of Regulation (EC) No. 178/2002, to collect data on the molecular testing of food‐borne pathogens such as Salmonella, Listeria monocytogenes and Shiga toxin‐producing Escherichia coli (STEC) from food, feed, animals and the related environment, to contribute to the epidemiological investigations of food‐borne outbreaks and to the identification of emerging health threats. EFSA is asked to collaborate with the European Centre for Disease Prevention and Control (ECDC), the Member States (MS) and European Union Reference Laboratories (EURL) for the collection of molecular typing data on isolates from food and food‐producing animals. This technical report is aimed to guide the EU MS in molecular typing data submission through the Data Collection Framework (DCF) using eXtensible Markup Language (XML), based on the Standard Sample Description 2.0 (SSD2) data model.
doi_str_mv 10.2903/sp.efsa.2019.EN-1534
format article
fullrecord <record><control><sourceid>proquest_24P</sourceid><recordid>TN_cdi_proquest_journals_2762932241</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2762932241</sourcerecordid><originalsourceid>FETCH-LOGICAL-c171E-53564f14b924ac1999f7f3b66cfe2b791c6135bec5893e0f141ee771da4118d93</originalsourceid><addsrcrecordid>eNqNkD9PwzAQxS0EElXpN2CwxMCU4rPzpxZTVdKCVJUBEKPlJOc2JY2DnajqtydRGRiZ7unpvbvTj5BbYFMumXjwzRSN11POQE7TTQCRCC_IiAuZBDPBo8s_-ppMvN8zxniSADA5Ip-rriywKmv01FhHHTbWtWW9pQdbYd5V2tH21AxGoVtN252z3XZH0-Xb_N7Tp8Fb2KqPtqWt6dLpAx6t-7ohV0ZXHie_c0w-lun74jlYv65eFvN1kEMCaRCJKA4NhJnkoc5BSmkSI7I4zg3yLJGQxyCiDPNoJgWyPgmI_e-FDgFmhRRjcnfe2zj73aFv1d52ru5PKp7EXArOQ-hT4TmVO-u9Q6MaVx60OylgaqCofKMGimqgqNKNGij2tcdz7VhWePpXR_VgxCBS8QPZMXmc</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2762932241</pqid></control><display><type>article</type><title>Guidelines for reporting molecular typing data through EFSA's Data Collection Framework</title><source>Open Access: Wiley-Blackwell Open Access Journals</source><creator>Delfino, Alessandro ; Pasinato, Luca ; Rizzi, Valentina ; Stoicescu, Anca‐Violeta</creator><creatorcontrib>Delfino, Alessandro ; Pasinato, Luca ; Rizzi, Valentina ; Stoicescu, Anca‐Violeta ; European Food Safety Authority (EFSA)</creatorcontrib><description>The European Food Safety Authority (EFSA) received the mandate from the European Commission (EC), in accordance with Article 31 of Regulation (EC) No. 178/2002, to collect data on the molecular testing of food‐borne pathogens such as Salmonella, Listeria monocytogenes and Shiga toxin‐producing Escherichia coli (STEC) from food, feed, animals and the related environment, to contribute to the epidemiological investigations of food‐borne outbreaks and to the identification of emerging health threats. EFSA is asked to collaborate with the European Centre for Disease Prevention and Control (ECDC), the Member States (MS) and European Union Reference Laboratories (EURL) for the collection of molecular typing data on isolates from food and food‐producing animals. This technical report is aimed to guide the EU MS in molecular typing data submission through the Data Collection Framework (DCF) using eXtensible Markup Language (XML), based on the Standard Sample Description 2.0 (SSD2) data model.</description><identifier>ISSN: 2397-8325</identifier><identifier>EISSN: 2397-8325</identifier><identifier>DOI: 10.2903/sp.efsa.2019.EN-1534</identifier><language>eng</language><publisher>Oxford: John Wiley &amp; Sons, Inc</publisher><subject>Animals ; Data collection ; E coli ; Epidemiology ; Extensible Markup Language ; Food ; Food contamination ; Health risks ; Shiga toxin ; Toxins ; Typing</subject><ispartof>EFSA supporting publications, 2019-01, Vol.16 (1), p.n/a</ispartof><rights>European Food Safety Authority, 2019</rights><rights>2019. This work is published under https://creativecommons.org/licenses/by-nc-nd/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c171E-53564f14b924ac1999f7f3b66cfe2b791c6135bec5893e0f141ee771da4118d93</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2762932241/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2762932241?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,11562,25753,27924,27925,37012,44590,46052,46476,75126</link.rule.ids><linktorsrc>$$Uhttps://onlinelibrary.wiley.com/doi/abs/10.2903%2Fsp.efsa.2019.EN-1534$$EView_record_in_Wiley-Blackwell$$FView_record_in_$$GWiley-Blackwell</linktorsrc></links><search><creatorcontrib>Delfino, Alessandro</creatorcontrib><creatorcontrib>Pasinato, Luca</creatorcontrib><creatorcontrib>Rizzi, Valentina</creatorcontrib><creatorcontrib>Stoicescu, Anca‐Violeta</creatorcontrib><creatorcontrib>European Food Safety Authority (EFSA)</creatorcontrib><title>Guidelines for reporting molecular typing data through EFSA's Data Collection Framework</title><title>EFSA supporting publications</title><description>The European Food Safety Authority (EFSA) received the mandate from the European Commission (EC), in accordance with Article 31 of Regulation (EC) No. 178/2002, to collect data on the molecular testing of food‐borne pathogens such as Salmonella, Listeria monocytogenes and Shiga toxin‐producing Escherichia coli (STEC) from food, feed, animals and the related environment, to contribute to the epidemiological investigations of food‐borne outbreaks and to the identification of emerging health threats. EFSA is asked to collaborate with the European Centre for Disease Prevention and Control (ECDC), the Member States (MS) and European Union Reference Laboratories (EURL) for the collection of molecular typing data on isolates from food and food‐producing animals. This technical report is aimed to guide the EU MS in molecular typing data submission through the Data Collection Framework (DCF) using eXtensible Markup Language (XML), based on the Standard Sample Description 2.0 (SSD2) data model.</description><subject>Animals</subject><subject>Data collection</subject><subject>E coli</subject><subject>Epidemiology</subject><subject>Extensible Markup Language</subject><subject>Food</subject><subject>Food contamination</subject><subject>Health risks</subject><subject>Shiga toxin</subject><subject>Toxins</subject><subject>Typing</subject><issn>2397-8325</issn><issn>2397-8325</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNqNkD9PwzAQxS0EElXpN2CwxMCU4rPzpxZTVdKCVJUBEKPlJOc2JY2DnajqtydRGRiZ7unpvbvTj5BbYFMumXjwzRSN11POQE7TTQCRCC_IiAuZBDPBo8s_-ppMvN8zxniSADA5Ip-rriywKmv01FhHHTbWtWW9pQdbYd5V2tH21AxGoVtN252z3XZH0-Xb_N7Tp8Fb2KqPtqWt6dLpAx6t-7ohV0ZXHie_c0w-lun74jlYv65eFvN1kEMCaRCJKA4NhJnkoc5BSmkSI7I4zg3yLJGQxyCiDPNoJgWyPgmI_e-FDgFmhRRjcnfe2zj73aFv1d52ru5PKp7EXArOQ-hT4TmVO-u9Q6MaVx60OylgaqCofKMGimqgqNKNGij2tcdz7VhWePpXR_VgxCBS8QPZMXmc</recordid><startdate>201901</startdate><enddate>201901</enddate><creator>Delfino, Alessandro</creator><creator>Pasinato, Luca</creator><creator>Rizzi, Valentina</creator><creator>Stoicescu, Anca‐Violeta</creator><general>John Wiley &amp; Sons, Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>PATMY</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PYCSY</scope></search><sort><creationdate>201901</creationdate><title>Guidelines for reporting molecular typing data through EFSA's Data Collection Framework</title><author>Delfino, Alessandro ; Pasinato, Luca ; Rizzi, Valentina ; Stoicescu, Anca‐Violeta</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c171E-53564f14b924ac1999f7f3b66cfe2b791c6135bec5893e0f141ee771da4118d93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Animals</topic><topic>Data collection</topic><topic>E coli</topic><topic>Epidemiology</topic><topic>Extensible Markup Language</topic><topic>Food</topic><topic>Food contamination</topic><topic>Health risks</topic><topic>Shiga toxin</topic><topic>Toxins</topic><topic>Typing</topic><toplevel>online_resources</toplevel><creatorcontrib>Delfino, Alessandro</creatorcontrib><creatorcontrib>Pasinato, Luca</creatorcontrib><creatorcontrib>Rizzi, Valentina</creatorcontrib><creatorcontrib>Stoicescu, Anca‐Violeta</creatorcontrib><creatorcontrib>European Food Safety Authority (EFSA)</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>Agricultural &amp; Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>Environmental Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Environmental Science Collection</collection><jtitle>EFSA supporting publications</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Delfino, Alessandro</au><au>Pasinato, Luca</au><au>Rizzi, Valentina</au><au>Stoicescu, Anca‐Violeta</au><aucorp>European Food Safety Authority (EFSA)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Guidelines for reporting molecular typing data through EFSA's Data Collection Framework</atitle><jtitle>EFSA supporting publications</jtitle><date>2019-01</date><risdate>2019</risdate><volume>16</volume><issue>1</issue><epage>n/a</epage><issn>2397-8325</issn><eissn>2397-8325</eissn><abstract>The European Food Safety Authority (EFSA) received the mandate from the European Commission (EC), in accordance with Article 31 of Regulation (EC) No. 178/2002, to collect data on the molecular testing of food‐borne pathogens such as Salmonella, Listeria monocytogenes and Shiga toxin‐producing Escherichia coli (STEC) from food, feed, animals and the related environment, to contribute to the epidemiological investigations of food‐borne outbreaks and to the identification of emerging health threats. EFSA is asked to collaborate with the European Centre for Disease Prevention and Control (ECDC), the Member States (MS) and European Union Reference Laboratories (EURL) for the collection of molecular typing data on isolates from food and food‐producing animals. This technical report is aimed to guide the EU MS in molecular typing data submission through the Data Collection Framework (DCF) using eXtensible Markup Language (XML), based on the Standard Sample Description 2.0 (SSD2) data model.</abstract><cop>Oxford</cop><pub>John Wiley &amp; Sons, Inc</pub><doi>10.2903/sp.efsa.2019.EN-1534</doi><tpages>41</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext_linktorsrc
identifier ISSN: 2397-8325
ispartof EFSA supporting publications, 2019-01, Vol.16 (1), p.n/a
issn 2397-8325
2397-8325
language eng
recordid cdi_proquest_journals_2762932241
source Open Access: Wiley-Blackwell Open Access Journals
subjects Animals
Data collection
E coli
Epidemiology
Extensible Markup Language
Food
Food contamination
Health risks
Shiga toxin
Toxins
Typing
title Guidelines for reporting molecular typing data through EFSA's Data Collection Framework
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-27T01%3A52%3A22IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_24P&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Guidelines%20for%20reporting%20molecular%20typing%20data%20through%20EFSA's%20Data%20Collection%20Framework&rft.jtitle=EFSA%20supporting%20publications&rft.au=Delfino,%20Alessandro&rft.aucorp=European%20Food%20Safety%20Authority%20(EFSA)&rft.date=2019-01&rft.volume=16&rft.issue=1&rft.epage=n/a&rft.issn=2397-8325&rft.eissn=2397-8325&rft_id=info:doi/10.2903/sp.efsa.2019.EN-1534&rft_dat=%3Cproquest_24P%3E2762932241%3C/proquest_24P%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c171E-53564f14b924ac1999f7f3b66cfe2b791c6135bec5893e0f141ee771da4118d93%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2762932241&rft_id=info:pmid/&rfr_iscdi=true