Loading…

The origin and population divergence of Parabotia curtus (Botiidae: Cypriniformes), a relict loach in Japan

Parabotia curtus is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mito...

Full description

Saved in:
Bibliographic Details
Published in:Ichthyological research 2023-04, Vol.70 (2), p.256-267
Main Authors: Ido, Keita, Abe, Tsukasa, Iwata, Akihisa, Watanabe, Katsutoshi
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites cdi_FETCH-LOGICAL-c363t-6dff7771486416355dd53ff2b84a3b6443d538242d882cb5b0076eea66585f8d3
container_end_page 267
container_issue 2
container_start_page 256
container_title Ichthyological research
container_volume 70
creator Ido, Keita
Abe, Tsukasa
Iwata, Akihisa
Watanabe, Katsutoshi
description Parabotia curtus is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mitochondrial genome data revealed that P . curtus was one of the earliest species derived from the most northward range-expanding botiid group ( Parabotia ) during the Late Miocene. A reduction in its distribution and population size during the Late Pleistocene was inferred from shallow but clear regional population divergence, as verified by mitochondrial sequence and microsatellite data. These results provide evidence that this species is a relict of an old layer of Japanese freshwater ichthyofauna and emphasize the need to conserve the Kinki and Sanyo populations as distinct evolutionary units.
doi_str_mv 10.1007/s10228-022-00884-z
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2792957792</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2792957792</sourcerecordid><originalsourceid>FETCH-LOGICAL-c363t-6dff7771486416355dd53ff2b84a3b6443d538242d882cb5b0076eea66585f8d3</originalsourceid><addsrcrecordid>eNp9UE1LAzEUDKJgrf4BTwEvCkbzsclmvWnxk4Ie6jlkd5M2dbtZk12h_fWmVvDmZd4bmJnHGwBOCb4iGOfXkWBKJUqAMJYyQ5s9MCKCCMQKwvfTzjKCZFHIQ3AU4xJjzHJOR-BjtjDQBzd3LdRtDTvfDY3unW9h7b5MmJu2SgIL33TQpe-dhtUQ-iHC87vEXK3NDZysu-BaZ31YmXhxCTUMpnFVDxuvqwVM0S-60-0xOLC6iebkd47B-8P9bPKEpq-Pz5PbKaqYYD0StbV5npNMiowIxnldc2YtLWWmWSmyjCUuaUZrKWlV8jIVIIzRQnDJrazZGJztcrvgPwcTe7X0Q2jTSUXzghY8T5hUdKeqgo8xGKvSEysd1opgtS1V7UpVCdRPqWqTTGxnituP5yb8Rf_j-gbtOHpD</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2792957792</pqid></control><display><type>article</type><title>The origin and population divergence of Parabotia curtus (Botiidae: Cypriniformes), a relict loach in Japan</title><source>Springer Nature</source><creator>Ido, Keita ; Abe, Tsukasa ; Iwata, Akihisa ; Watanabe, Katsutoshi</creator><creatorcontrib>Ido, Keita ; Abe, Tsukasa ; Iwata, Akihisa ; Watanabe, Katsutoshi</creatorcontrib><description>Parabotia curtus is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mitochondrial genome data revealed that P . curtus was one of the earliest species derived from the most northward range-expanding botiid group ( Parabotia ) during the Late Miocene. A reduction in its distribution and population size during the Late Pleistocene was inferred from shallow but clear regional population divergence, as verified by mitochondrial sequence and microsatellite data. These results provide evidence that this species is a relict of an old layer of Japanese freshwater ichthyofauna and emphasize the need to conserve the Kinki and Sanyo populations as distinct evolutionary units.</description><identifier>ISSN: 1341-8998</identifier><identifier>EISSN: 1616-3915</identifier><identifier>DOI: 10.1007/s10228-022-00884-z</identifier><language>eng</language><publisher>Tokyo: Springer Japan</publisher><subject>Animal Systematics/Taxonomy/Biogeography ; Biomedical and Life Sciences ; Divergence ; Ecology ; Evolutionary genetics ; Freshwater ; Freshwater &amp; Marine Ecology ; Genetic analysis ; Genomes ; Ichthyofauna ; Inland water environment ; Life Sciences ; Microsatellites ; Miocene ; Mitochondria ; Nucleotide sequence ; Parabotia ; Phylogenetics ; Phylogeny ; Pleistocene ; Population genetics ; Population number ; Zoology</subject><ispartof>Ichthyological research, 2023-04, Vol.70 (2), p.256-267</ispartof><rights>The Author(s) under exclusive licence to The Ichthyological Society of Japan 2022. Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c363t-6dff7771486416355dd53ff2b84a3b6443d538242d882cb5b0076eea66585f8d3</cites><orcidid>0000-0003-2244-2902</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids></links><search><creatorcontrib>Ido, Keita</creatorcontrib><creatorcontrib>Abe, Tsukasa</creatorcontrib><creatorcontrib>Iwata, Akihisa</creatorcontrib><creatorcontrib>Watanabe, Katsutoshi</creatorcontrib><title>The origin and population divergence of Parabotia curtus (Botiidae: Cypriniformes), a relict loach in Japan</title><title>Ichthyological research</title><addtitle>Ichthyol Res</addtitle><description>Parabotia curtus is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mitochondrial genome data revealed that P . curtus was one of the earliest species derived from the most northward range-expanding botiid group ( Parabotia ) during the Late Miocene. A reduction in its distribution and population size during the Late Pleistocene was inferred from shallow but clear regional population divergence, as verified by mitochondrial sequence and microsatellite data. These results provide evidence that this species is a relict of an old layer of Japanese freshwater ichthyofauna and emphasize the need to conserve the Kinki and Sanyo populations as distinct evolutionary units.</description><subject>Animal Systematics/Taxonomy/Biogeography</subject><subject>Biomedical and Life Sciences</subject><subject>Divergence</subject><subject>Ecology</subject><subject>Evolutionary genetics</subject><subject>Freshwater</subject><subject>Freshwater &amp; Marine Ecology</subject><subject>Genetic analysis</subject><subject>Genomes</subject><subject>Ichthyofauna</subject><subject>Inland water environment</subject><subject>Life Sciences</subject><subject>Microsatellites</subject><subject>Miocene</subject><subject>Mitochondria</subject><subject>Nucleotide sequence</subject><subject>Parabotia</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Pleistocene</subject><subject>Population genetics</subject><subject>Population number</subject><subject>Zoology</subject><issn>1341-8998</issn><issn>1616-3915</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNp9UE1LAzEUDKJgrf4BTwEvCkbzsclmvWnxk4Ie6jlkd5M2dbtZk12h_fWmVvDmZd4bmJnHGwBOCb4iGOfXkWBKJUqAMJYyQ5s9MCKCCMQKwvfTzjKCZFHIQ3AU4xJjzHJOR-BjtjDQBzd3LdRtDTvfDY3unW9h7b5MmJu2SgIL33TQpe-dhtUQ-iHC87vEXK3NDZysu-BaZ31YmXhxCTUMpnFVDxuvqwVM0S-60-0xOLC6iebkd47B-8P9bPKEpq-Pz5PbKaqYYD0StbV5npNMiowIxnldc2YtLWWmWSmyjCUuaUZrKWlV8jIVIIzRQnDJrazZGJztcrvgPwcTe7X0Q2jTSUXzghY8T5hUdKeqgo8xGKvSEysd1opgtS1V7UpVCdRPqWqTTGxnituP5yb8Rf_j-gbtOHpD</recordid><startdate>20230401</startdate><enddate>20230401</enddate><creator>Ido, Keita</creator><creator>Abe, Tsukasa</creator><creator>Iwata, Akihisa</creator><creator>Watanabe, Katsutoshi</creator><general>Springer Japan</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7TN</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0003-2244-2902</orcidid></search><sort><creationdate>20230401</creationdate><title>The origin and population divergence of Parabotia curtus (Botiidae: Cypriniformes), a relict loach in Japan</title><author>Ido, Keita ; Abe, Tsukasa ; Iwata, Akihisa ; Watanabe, Katsutoshi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c363t-6dff7771486416355dd53ff2b84a3b6443d538242d882cb5b0076eea66585f8d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Animal Systematics/Taxonomy/Biogeography</topic><topic>Biomedical and Life Sciences</topic><topic>Divergence</topic><topic>Ecology</topic><topic>Evolutionary genetics</topic><topic>Freshwater</topic><topic>Freshwater &amp; Marine Ecology</topic><topic>Genetic analysis</topic><topic>Genomes</topic><topic>Ichthyofauna</topic><topic>Inland water environment</topic><topic>Life Sciences</topic><topic>Microsatellites</topic><topic>Miocene</topic><topic>Mitochondria</topic><topic>Nucleotide sequence</topic><topic>Parabotia</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Pleistocene</topic><topic>Population genetics</topic><topic>Population number</topic><topic>Zoology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ido, Keita</creatorcontrib><creatorcontrib>Abe, Tsukasa</creatorcontrib><creatorcontrib>Iwata, Akihisa</creatorcontrib><creatorcontrib>Watanabe, Katsutoshi</creatorcontrib><collection>CrossRef</collection><collection>Oceanic Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science &amp; Fisheries Abstracts (ASFA) 1: Biological Sciences &amp; Living Resources</collection><collection>Aquatic Science &amp; Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Ichthyological research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ido, Keita</au><au>Abe, Tsukasa</au><au>Iwata, Akihisa</au><au>Watanabe, Katsutoshi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The origin and population divergence of Parabotia curtus (Botiidae: Cypriniformes), a relict loach in Japan</atitle><jtitle>Ichthyological research</jtitle><stitle>Ichthyol Res</stitle><date>2023-04-01</date><risdate>2023</risdate><volume>70</volume><issue>2</issue><spage>256</spage><epage>267</epage><pages>256-267</pages><issn>1341-8998</issn><eissn>1616-3915</eissn><abstract>Parabotia curtus is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mitochondrial genome data revealed that P . curtus was one of the earliest species derived from the most northward range-expanding botiid group ( Parabotia ) during the Late Miocene. A reduction in its distribution and population size during the Late Pleistocene was inferred from shallow but clear regional population divergence, as verified by mitochondrial sequence and microsatellite data. These results provide evidence that this species is a relict of an old layer of Japanese freshwater ichthyofauna and emphasize the need to conserve the Kinki and Sanyo populations as distinct evolutionary units.</abstract><cop>Tokyo</cop><pub>Springer Japan</pub><doi>10.1007/s10228-022-00884-z</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-2244-2902</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 1341-8998
ispartof Ichthyological research, 2023-04, Vol.70 (2), p.256-267
issn 1341-8998
1616-3915
language eng
recordid cdi_proquest_journals_2792957792
source Springer Nature
subjects Animal Systematics/Taxonomy/Biogeography
Biomedical and Life Sciences
Divergence
Ecology
Evolutionary genetics
Freshwater
Freshwater & Marine Ecology
Genetic analysis
Genomes
Ichthyofauna
Inland water environment
Life Sciences
Microsatellites
Miocene
Mitochondria
Nucleotide sequence
Parabotia
Phylogenetics
Phylogeny
Pleistocene
Population genetics
Population number
Zoology
title The origin and population divergence of Parabotia curtus (Botiidae: Cypriniformes), a relict loach in Japan
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-09T07%3A40%3A10IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20origin%20and%20population%20divergence%20of%20Parabotia%20curtus%20(Botiidae:%20Cypriniformes),%20a%20relict%20loach%20in%20Japan&rft.jtitle=Ichthyological%20research&rft.au=Ido,%20Keita&rft.date=2023-04-01&rft.volume=70&rft.issue=2&rft.spage=256&rft.epage=267&rft.pages=256-267&rft.issn=1341-8998&rft.eissn=1616-3915&rft_id=info:doi/10.1007/s10228-022-00884-z&rft_dat=%3Cproquest_cross%3E2792957792%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c363t-6dff7771486416355dd53ff2b84a3b6443d538242d882cb5b0076eea66585f8d3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2792957792&rft_id=info:pmid/&rfr_iscdi=true