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The origin and population divergence of Parabotia curtus (Botiidae: Cypriniformes), a relict loach in Japan
Parabotia curtus is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mito...
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Published in: | Ichthyological research 2023-04, Vol.70 (2), p.256-267 |
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creator | Ido, Keita Abe, Tsukasa Iwata, Akihisa Watanabe, Katsutoshi |
description | Parabotia curtus
is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mitochondrial genome data revealed that
P
.
curtus
was one of the earliest species derived from the most northward range-expanding botiid group (
Parabotia
) during the Late Miocene. A reduction in its distribution and population size during the Late Pleistocene was inferred from shallow but clear regional population divergence, as verified by mitochondrial sequence and microsatellite data. These results provide evidence that this species is a relict of an old layer of Japanese freshwater ichthyofauna and emphasize the need to conserve the Kinki and Sanyo populations as distinct evolutionary units. |
doi_str_mv | 10.1007/s10228-022-00884-z |
format | article |
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is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mitochondrial genome data revealed that
P
.
curtus
was one of the earliest species derived from the most northward range-expanding botiid group (
Parabotia
) during the Late Miocene. A reduction in its distribution and population size during the Late Pleistocene was inferred from shallow but clear regional population divergence, as verified by mitochondrial sequence and microsatellite data. These results provide evidence that this species is a relict of an old layer of Japanese freshwater ichthyofauna and emphasize the need to conserve the Kinki and Sanyo populations as distinct evolutionary units.</description><identifier>ISSN: 1341-8998</identifier><identifier>EISSN: 1616-3915</identifier><identifier>DOI: 10.1007/s10228-022-00884-z</identifier><language>eng</language><publisher>Tokyo: Springer Japan</publisher><subject>Animal Systematics/Taxonomy/Biogeography ; Biomedical and Life Sciences ; Divergence ; Ecology ; Evolutionary genetics ; Freshwater ; Freshwater & Marine Ecology ; Genetic analysis ; Genomes ; Ichthyofauna ; Inland water environment ; Life Sciences ; Microsatellites ; Miocene ; Mitochondria ; Nucleotide sequence ; Parabotia ; Phylogenetics ; Phylogeny ; Pleistocene ; Population genetics ; Population number ; Zoology</subject><ispartof>Ichthyological research, 2023-04, Vol.70 (2), p.256-267</ispartof><rights>The Author(s) under exclusive licence to The Ichthyological Society of Japan 2022. Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c363t-6dff7771486416355dd53ff2b84a3b6443d538242d882cb5b0076eea66585f8d3</cites><orcidid>0000-0003-2244-2902</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids></links><search><creatorcontrib>Ido, Keita</creatorcontrib><creatorcontrib>Abe, Tsukasa</creatorcontrib><creatorcontrib>Iwata, Akihisa</creatorcontrib><creatorcontrib>Watanabe, Katsutoshi</creatorcontrib><title>The origin and population divergence of Parabotia curtus (Botiidae: Cypriniformes), a relict loach in Japan</title><title>Ichthyological research</title><addtitle>Ichthyol Res</addtitle><description>Parabotia curtus
is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mitochondrial genome data revealed that
P
.
curtus
was one of the earliest species derived from the most northward range-expanding botiid group (
Parabotia
) during the Late Miocene. A reduction in its distribution and population size during the Late Pleistocene was inferred from shallow but clear regional population divergence, as verified by mitochondrial sequence and microsatellite data. 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is the only botiid species in Japan, where its range is restricted to two small regions, Kinki and Sanyo. In this study, we performed molecular phylogenetic and population genetic analyses to reconstruct the evolutionary history of this species. A time tree constructed based on mitochondrial genome data revealed that
P
.
curtus
was one of the earliest species derived from the most northward range-expanding botiid group (
Parabotia
) during the Late Miocene. A reduction in its distribution and population size during the Late Pleistocene was inferred from shallow but clear regional population divergence, as verified by mitochondrial sequence and microsatellite data. These results provide evidence that this species is a relict of an old layer of Japanese freshwater ichthyofauna and emphasize the need to conserve the Kinki and Sanyo populations as distinct evolutionary units.</abstract><cop>Tokyo</cop><pub>Springer Japan</pub><doi>10.1007/s10228-022-00884-z</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-2244-2902</orcidid></addata></record> |
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source | Springer Nature |
subjects | Animal Systematics/Taxonomy/Biogeography Biomedical and Life Sciences Divergence Ecology Evolutionary genetics Freshwater Freshwater & Marine Ecology Genetic analysis Genomes Ichthyofauna Inland water environment Life Sciences Microsatellites Miocene Mitochondria Nucleotide sequence Parabotia Phylogenetics Phylogeny Pleistocene Population genetics Population number Zoology |
title | The origin and population divergence of Parabotia curtus (Botiidae: Cypriniformes), a relict loach in Japan |
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