Phylogeny, origin and diversification of the Dasylirion genus based on matK and rbcL sequences

• Published in: Plant genetic resources: characterization and utilization 2022-04, Vol.20 (2), p.108-115
• Main Authors: Ortiz-Covarrubias, Yadhira C., Orozco-Sifuentes, Martha Monzerrath, Mendoza-Rodríguez, Dulce V., Villlarreal-Quintanilla, José A., Martínez, Octavio, Hernández-Godínez, Fernando, Jáuregui-González, María de Jesús, Reyes-Valdés, M. Humberto
• Format: Article
• Language: English
• Subjects: Arid regions; Arid zones; Chloroplast DNA; Chloroplasts; Dasylirion; Deoxyribonucleic acid; Diversification; DNA; Flowers & plants; Gene sequencing; Geomorphology; Hypotheses; K gene; Lower bounds; Maximum likelihood method; Morphology; Nucleotide sequence; Nucleotides; Phylogenetics; Phylogeny; Ribulose-1,5-bisphosphate; Semi arid areas; Semiarid lands; Speciation; Substitutes
• ISSN: 1479-2621; 1479-263X
• DOI: 10.1017/S1479262122000181

The Dasylirion genus is highly represented in the arid and semi-arid regions of Mexico and USA, playing important ecological and economical roles. Inferring the evolutionary patterns of this group will eventually facilitate understanding biological phenomena and outlining conservation and usage strategies. We performed a molecular phylogenetic analysis based on two chloroplast DNA regions: maturase-K gene ( matK ) and the large subunit of ribulose-1,5-bisphosphate carboxylase gene ( rbcL ). We constructed a phylogenetic tree by maximum likelihood with GTR as the sequence substitution model and a relaxed clock, inferred diversification patterns by lineage through time and explored the diversification rates of Dasylirion by the Yule model. The study included 11 species of the genus, which represent 50% of all its known species. We used two calibration points to date the tree, one based on fossil records of Acorus gramineus , and the other on the estimated stem age of the Yucca genus. The combined sequences of the two partial genes comprised 1455 bp and 18 polymorphic sites. We estimated an average substitution rate of 0.0005 nucleotide per million years for the concatenated DNA sequences. The molecular dating analysis estimated that the Dasylirion genus appeared more than 5.46 million years ago, with a rate of diversification of 0.0466 net speciation events per million years. The estimated age represents a lower bound, since not all Dasylirion species are included. These findings are consistent with other origin and diversification hypotheses for arid-land Asparagaceae in the Mexican highlands as a result of geomorphological events in North America.