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Fitting sparse Markov models through a collapsed Gibbs sampler
Sparse Markov models (SMMs) provide a parsimonious representation for higher-order Markov models. We present a computationally efficient method for fitting SMMs using a collapsed Gibbs sampler, the GSDPMM. We prove the consistency of the GSDPMM in fitting SMMs. In simulations, the GSDPMM was found t...
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Published in: | Computational statistics 2023-12, Vol.38 (4), p.1977-1994 |
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Main Authors: | , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites |
Online Access: | Get full text |
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Summary: | Sparse Markov models (SMMs) provide a parsimonious representation for higher-order Markov models. We present a computationally efficient method for fitting SMMs using a collapsed Gibbs sampler, the GSDPMM. We prove the consistency of the GSDPMM in fitting SMMs. In simulations, the GSDPMM was found to perform as well or better than existing methods for fitting SMMs. We apply the GSDPMM method to fit SMMs to patterns of wind speeds and DNA sequences. |
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ISSN: | 0943-4062 1613-9658 |
DOI: | 10.1007/s00180-022-01310-8 |