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Transcriptome analysis of Iris japonica var. variegata for chlorophyll and photosynthesis-related pathways involved in white–green striped leaves
As a well-known garden plant, many beautiful iris flower phenotypes and leaf variegation have been created. Iris japonica var. variegata is a variant of I. japonica that has a white–green striped leaf color genotype. It has high horticultural value, but its underlying molecular mechanisms remain unc...
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Published in: | Acta physiologiae plantarum 2024, Vol.46 (1), Article 12 |
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container_title | Acta physiologiae plantarum |
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creator | Yu, Xiaofang Yue, Linjie He, Qingling Li, Shurui Zheng, Yunhao Wang, Zhiwen Wang, Heting Liu, Rouzhi Huang, Xin Xiao, Xue Yang, Lijuan Lei, Ting |
description | As a well-known garden plant, many beautiful iris flower phenotypes and leaf variegation have been created.
Iris japonica
var.
variegata
is a variant of
I. japonica
that has a white–green striped leaf color genotype. It has high horticultural value, but its underlying molecular mechanisms remain unclear. Here, we analyzed the physiological features and ultrastructural observation of white and green tissues. In our study, the results showed that the phenotype was related to the abnormal chloroplast morphology and deficiencies in chlorophyll. To understand the mechanisms for these observations, we used Illumina sequencing technology to identify the transcriptome and profile differentially expressed genes (DEGs). We identified 1327 DEGs in white leaf tissues compared with green leaf tissues, including 342 upregulated genes and 985 downregulated DEGs. The downregulated DEGs included porphyrin and chlorophyll metabolism, chloroplast development, and photosynthetic pathways. Changes in the expression of genes (
CYSG
and
GLK
) involved in these pathways could be responsible for the phenotype of
I. japonica
var.
variegata
. To our knowledge, this is the first time that evidence has been provided to better understand the primary cause of chloroplast structure in white–green striped leaves for iris and will be valuable for the iris breeding industry. |
doi_str_mv | 10.1007/s11738-023-03638-0 |
format | article |
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Iris japonica
var.
variegata
is a variant of
I. japonica
that has a white–green striped leaf color genotype. It has high horticultural value, but its underlying molecular mechanisms remain unclear. Here, we analyzed the physiological features and ultrastructural observation of white and green tissues. In our study, the results showed that the phenotype was related to the abnormal chloroplast morphology and deficiencies in chlorophyll. To understand the mechanisms for these observations, we used Illumina sequencing technology to identify the transcriptome and profile differentially expressed genes (DEGs). We identified 1327 DEGs in white leaf tissues compared with green leaf tissues, including 342 upregulated genes and 985 downregulated DEGs. The downregulated DEGs included porphyrin and chlorophyll metabolism, chloroplast development, and photosynthetic pathways. Changes in the expression of genes (
CYSG
and
GLK
) involved in these pathways could be responsible for the phenotype of
I. japonica
var.
variegata
. To our knowledge, this is the first time that evidence has been provided to better understand the primary cause of chloroplast structure in white–green striped leaves for iris and will be valuable for the iris breeding industry.</description><identifier>ISSN: 0137-5881</identifier><identifier>EISSN: 1861-1664</identifier><identifier>DOI: 10.1007/s11738-023-03638-0</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agriculture ; Biomedical and Life Sciences ; Chlorophyll ; Chloroplasts ; Down-regulation ; Gene expression ; Genes ; Genotypes ; Leaves ; Life Sciences ; Molecular modelling ; Original Article ; Phenotypes ; Photosynthesis ; Plant Anatomy/Development ; Plant Biochemistry ; Plant breeding ; Plant Genetics and Genomics ; Plant Pathology ; Plant Physiology ; Plant tissues ; Porphyrins ; Transcriptomes ; Variegation</subject><ispartof>Acta physiologiae plantarum, 2024, Vol.46 (1), Article 12</ispartof><rights>The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c270t-578094dcbf535358b8e6268e9eb1594cb630c1491deb6285a51532791ec28c3e3</cites><orcidid>0000-0002-1933-636X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Yu, Xiaofang</creatorcontrib><creatorcontrib>Yue, Linjie</creatorcontrib><creatorcontrib>He, Qingling</creatorcontrib><creatorcontrib>Li, Shurui</creatorcontrib><creatorcontrib>Zheng, Yunhao</creatorcontrib><creatorcontrib>Wang, Zhiwen</creatorcontrib><creatorcontrib>Wang, Heting</creatorcontrib><creatorcontrib>Liu, Rouzhi</creatorcontrib><creatorcontrib>Huang, Xin</creatorcontrib><creatorcontrib>Xiao, Xue</creatorcontrib><creatorcontrib>Yang, Lijuan</creatorcontrib><creatorcontrib>Lei, Ting</creatorcontrib><title>Transcriptome analysis of Iris japonica var. variegata for chlorophyll and photosynthesis-related pathways involved in white–green striped leaves</title><title>Acta physiologiae plantarum</title><addtitle>Acta Physiol Plant</addtitle><description>As a well-known garden plant, many beautiful iris flower phenotypes and leaf variegation have been created.
Iris japonica
var.
variegata
is a variant of
I. japonica
that has a white–green striped leaf color genotype. It has high horticultural value, but its underlying molecular mechanisms remain unclear. Here, we analyzed the physiological features and ultrastructural observation of white and green tissues. In our study, the results showed that the phenotype was related to the abnormal chloroplast morphology and deficiencies in chlorophyll. To understand the mechanisms for these observations, we used Illumina sequencing technology to identify the transcriptome and profile differentially expressed genes (DEGs). We identified 1327 DEGs in white leaf tissues compared with green leaf tissues, including 342 upregulated genes and 985 downregulated DEGs. The downregulated DEGs included porphyrin and chlorophyll metabolism, chloroplast development, and photosynthetic pathways. Changes in the expression of genes (
CYSG
and
GLK
) involved in these pathways could be responsible for the phenotype of
I. japonica
var.
variegata
. To our knowledge, this is the first time that evidence has been provided to better understand the primary cause of chloroplast structure in white–green striped leaves for iris and will be valuable for the iris breeding industry.</description><subject>Agriculture</subject><subject>Biomedical and Life Sciences</subject><subject>Chlorophyll</subject><subject>Chloroplasts</subject><subject>Down-regulation</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genotypes</subject><subject>Leaves</subject><subject>Life Sciences</subject><subject>Molecular modelling</subject><subject>Original Article</subject><subject>Phenotypes</subject><subject>Photosynthesis</subject><subject>Plant Anatomy/Development</subject><subject>Plant Biochemistry</subject><subject>Plant breeding</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Pathology</subject><subject>Plant Physiology</subject><subject>Plant tissues</subject><subject>Porphyrins</subject><subject>Transcriptomes</subject><subject>Variegation</subject><issn>0137-5881</issn><issn>1861-1664</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp9kE1OwzAQhS0EEqVwAVaWWKfYce04S1TxU6kSm7K2HHfSpErjYLupsuMO3JCT4BIkdmxmRuP3nsYfQreUzCgh2b2nNGMyISlLCBOn6QxNqBQ0oULMz9GEUJYlXEp6ia683xHCGRdigj7XTrfeuLoLdg9Yt7oZfO2xLfHSxb7TnW1ro3Gv3exUatjqoHFpHTZVY53tqqFponGDu8oG64c2VBAjEgeNDhDXOlRHPXhct71t-ripW3ys6gBfH59bB9BiH-IB8aEB3YO_Rhelbjzc_PYpent6XC9ektXr83LxsEpMmpGQ8EySfL4xRRn_wrgsJIhUSMihoDyfm0IwYug8pxsoRCq55pSzNMspmFQaBmyK7sbcztn3A_igdvbgIgGv0pwwmedEkqhKR5Vx1nsHpepcvdduUJSoE3w1wlcRvvqBr04mNpp8FLdbcH_R_7i-AV-bi9k</recordid><startdate>2024</startdate><enddate>2024</enddate><creator>Yu, Xiaofang</creator><creator>Yue, Linjie</creator><creator>He, Qingling</creator><creator>Li, Shurui</creator><creator>Zheng, Yunhao</creator><creator>Wang, Zhiwen</creator><creator>Wang, Heting</creator><creator>Liu, Rouzhi</creator><creator>Huang, Xin</creator><creator>Xiao, Xue</creator><creator>Yang, Lijuan</creator><creator>Lei, Ting</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><orcidid>https://orcid.org/0000-0002-1933-636X</orcidid></search><sort><creationdate>2024</creationdate><title>Transcriptome analysis of Iris japonica var. variegata for chlorophyll and photosynthesis-related pathways involved in white–green striped leaves</title><author>Yu, Xiaofang ; Yue, Linjie ; He, Qingling ; Li, Shurui ; Zheng, Yunhao ; Wang, Zhiwen ; Wang, Heting ; Liu, Rouzhi ; Huang, Xin ; Xiao, Xue ; Yang, Lijuan ; Lei, Ting</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c270t-578094dcbf535358b8e6268e9eb1594cb630c1491deb6285a51532791ec28c3e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Agriculture</topic><topic>Biomedical and Life Sciences</topic><topic>Chlorophyll</topic><topic>Chloroplasts</topic><topic>Down-regulation</topic><topic>Gene expression</topic><topic>Genes</topic><topic>Genotypes</topic><topic>Leaves</topic><topic>Life Sciences</topic><topic>Molecular modelling</topic><topic>Original Article</topic><topic>Phenotypes</topic><topic>Photosynthesis</topic><topic>Plant Anatomy/Development</topic><topic>Plant Biochemistry</topic><topic>Plant breeding</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Pathology</topic><topic>Plant Physiology</topic><topic>Plant tissues</topic><topic>Porphyrins</topic><topic>Transcriptomes</topic><topic>Variegation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yu, Xiaofang</creatorcontrib><creatorcontrib>Yue, Linjie</creatorcontrib><creatorcontrib>He, Qingling</creatorcontrib><creatorcontrib>Li, Shurui</creatorcontrib><creatorcontrib>Zheng, Yunhao</creatorcontrib><creatorcontrib>Wang, Zhiwen</creatorcontrib><creatorcontrib>Wang, Heting</creatorcontrib><creatorcontrib>Liu, Rouzhi</creatorcontrib><creatorcontrib>Huang, Xin</creatorcontrib><creatorcontrib>Xiao, Xue</creatorcontrib><creatorcontrib>Yang, Lijuan</creatorcontrib><creatorcontrib>Lei, Ting</creatorcontrib><collection>CrossRef</collection><jtitle>Acta physiologiae plantarum</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yu, Xiaofang</au><au>Yue, Linjie</au><au>He, Qingling</au><au>Li, Shurui</au><au>Zheng, Yunhao</au><au>Wang, Zhiwen</au><au>Wang, Heting</au><au>Liu, Rouzhi</au><au>Huang, Xin</au><au>Xiao, Xue</au><au>Yang, Lijuan</au><au>Lei, Ting</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transcriptome analysis of Iris japonica var. variegata for chlorophyll and photosynthesis-related pathways involved in white–green striped leaves</atitle><jtitle>Acta physiologiae plantarum</jtitle><stitle>Acta Physiol Plant</stitle><date>2024</date><risdate>2024</risdate><volume>46</volume><issue>1</issue><artnum>12</artnum><issn>0137-5881</issn><eissn>1861-1664</eissn><abstract>As a well-known garden plant, many beautiful iris flower phenotypes and leaf variegation have been created.
Iris japonica
var.
variegata
is a variant of
I. japonica
that has a white–green striped leaf color genotype. It has high horticultural value, but its underlying molecular mechanisms remain unclear. Here, we analyzed the physiological features and ultrastructural observation of white and green tissues. In our study, the results showed that the phenotype was related to the abnormal chloroplast morphology and deficiencies in chlorophyll. To understand the mechanisms for these observations, we used Illumina sequencing technology to identify the transcriptome and profile differentially expressed genes (DEGs). We identified 1327 DEGs in white leaf tissues compared with green leaf tissues, including 342 upregulated genes and 985 downregulated DEGs. The downregulated DEGs included porphyrin and chlorophyll metabolism, chloroplast development, and photosynthetic pathways. Changes in the expression of genes (
CYSG
and
GLK
) involved in these pathways could be responsible for the phenotype of
I. japonica
var.
variegata
. To our knowledge, this is the first time that evidence has been provided to better understand the primary cause of chloroplast structure in white–green striped leaves for iris and will be valuable for the iris breeding industry.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1007/s11738-023-03638-0</doi><orcidid>https://orcid.org/0000-0002-1933-636X</orcidid></addata></record> |
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subjects | Agriculture Biomedical and Life Sciences Chlorophyll Chloroplasts Down-regulation Gene expression Genes Genotypes Leaves Life Sciences Molecular modelling Original Article Phenotypes Photosynthesis Plant Anatomy/Development Plant Biochemistry Plant breeding Plant Genetics and Genomics Plant Pathology Plant Physiology Plant tissues Porphyrins Transcriptomes Variegation |
title | Transcriptome analysis of Iris japonica var. variegata for chlorophyll and photosynthesis-related pathways involved in white–green striped leaves |
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