A Modular Turn‐On Strategy to Profile E2‐Specific Ubiquitination Events in Living Cells

• Published in: Angewandte Chemie 2024-03, Vol.136 (13), p.n/a
• Main Authors: Hill, Caitlin J., Datta, Suprama, McCurtin, Nicholas P., Kimball, Hannah Z., Kingsley, Molly C., Bayer, Abraham L., Martin, Alexander C., Peng, Qianni, Weerapana, Eranthie, Scheck, Rebecca A.
• Format: Article
• Language: English
• Subjects: Cell lines; chemical methods; conditional protein splicing; Mammalian cells; post-translational modifications; protein profiling; Substrates; Therapeutic targets; Topology; Ubiquitin; ubiquitin proteasome system; Ubiquitination
• ISSN: 0044-8249; 1521-3757
• DOI: 10.1002/ange.202319579

A cascade of three enzymes, E1−E2−E3, is responsible for transferring ubiquitin to target proteins, which controls many different aspects of cellular signaling. The role of the E2 has been largely overlooked, despite influencing substrate identity, chain multiplicity, and topology. Here we report a method—targeted charging of ubiquitin to E2 (tCUbE)—that can track a tagged ubiquitin through its entire enzymatic cascade in living mammalian cells. We use this approach to reveal new targets whose ubiquitination depends on UbcH5a E2 activity. We demonstrate that tCUbE can be broadly applied to multiple E2s and in different human cell lines. tCUbE is uniquely suited to examine E2−E3‐substrate cascades of interest and/or piece together previously unidentified cascades, thereby illuminating entire branches of the UPS and providing critical insight that will be useful for identifying new therapeutic targets in the UPS. A cascade of three enzymes, E1−E2−E3, is responsible for transferring ubiquitin to target proteins, but the role of the central E2 has been largely overlooked. This work presents a new method, called targeted charging of ubiquitin to E2, or tCUbE, that can follow ubiquitin all the way through its cascade to report on E2 activity and interactions in living mammalian cells.