ASSESSMENT OF GENETIC DIVERSITY IN THE SACCHARUM GERMPLASM OF SRI LANKA

ABSTRACT Two hundred accessions of Saccharum germplasm repository of Sri Lanka were assessed for genetic diversity using 23 SSR primers. The accessions comprised typical Saccharum officinarum, Sacchurum spp. hybrids, Saccharum spontaneum and Erianthus arundinaceous. Similarity matrix and dendrogram...

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Bibliographic Details
Published in:Pakistan sugar journal 2024-03, Vol.39 (1), p.5
Main Authors: Alawaturage Malika Marian Sudarshini Perera, Don Padmapriya Shantha Thilak Gunasekera Attanayaka, Wijesuriya, Aruna
Format: Article
Language:English
Subjects:
Alleles
Breeding
Clustering
Erianthus
Genetic analysis
Genetic distance
Genetic diversity
Genetic relationship
Genetic variation
Germplasm
Hybrids
Mathematical analysis
Morphology
Phylogenetics
Plant breeding
Primers
Reproductive behaviour
Saccharum officinarum
Saccharum spontaneum
Sugarcane
Variance analysis
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Summary:ABSTRACT Two hundred accessions of Saccharum germplasm repository of Sri Lanka were assessed for genetic diversity using 23 SSR primers. The accessions comprised typical Saccharum officinarum, Sacchurum spp. hybrids, Saccharum spontaneum and Erianthus arundinaceous. Similarity matrix and dendrogram were constructed using the NTSYS pc 2.2. The values of polymorphic information content (PIC) were calculated for each primer to evaluate their efficiency. Based on genetic distances, analysis of molecular variance (AMOVA), principal coordinate analysis, Nei's gene diversity, Shannon's information index, number of polymorphic loci and their percentages for different types of accessions were performed to assess genetic relationship using GenAlEx-6,-6.5 and Popgene-1.31. A total of 439 SSR alleles were scored for tested primers. At the genetic similarity coefficient of 79%, the accessions were classified into four major clusters. The genetic similarity among accessions ranged from 0.957 to 0.665. The average PIC value of primers was 0.926. AMOVA confirmed that the variation of the accessions within population was higher (84%) than between populations (16%). Based on the results of principal coordinate analysis, the accessions clustered into 3 major groups: i). hybrids imported from Pakistan, ii). Erianthus arundinaceous with all other hybrids and iii). Saccharum officinarum with Saccharum spontaneum. Almost similar clustering pattern of accessions was obtained from principal coordinate analysis and dendrogram based on similarity indices. The highest Nei's gene diversity and Shannon's information index values confirmed that high genetic diversity observed within imported sugarcane hybrids. The information derived from this study is important in devising mating systems for maximizing efficiency of sugarcane breeding in Sri Lanka.
ISSN:1028-1193