Loading…

Transfer Learning for the Identification of Paediatric EEGs With Interictal Epileptiform Abnormalities

EEG is a test that helps in the clinical diagnosis of epilepsy. Epilepsy diagnosis is facilitated by establishing the presence of interictal epileptiform abnormalities on EEG, which predict an increased risk of seizure. The identification of interictal epileptiform discharges is a time-consuming tas...

Full description

Saved in:
Bibliographic Details
Published in:IEEE access 2024, Vol.12, p.86073-86082
Main Authors: Wei, Lan, Mchugh, John C., Mooney, Catherine
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites cdi_FETCH-LOGICAL-c289t-35c4ca32ee353a4c02d5a2c8d8671e2ab5f0fdb47cd1382284b07dafdf20c4f23
container_end_page 86082
container_issue
container_start_page 86073
container_title IEEE access
container_volume 12
creator Wei, Lan
Mchugh, John C.
Mooney, Catherine
description EEG is a test that helps in the clinical diagnosis of epilepsy. Epilepsy diagnosis is facilitated by establishing the presence of interictal epileptiform abnormalities on EEG, which predict an increased risk of seizure. The identification of interictal epileptiform discharges is a time-consuming task that requires highly-trained experts. A method to assist in the recognition of EEGs with epileptiform abnormalities was developed using transfer learning on multiple channels of paediatric EEGs, without the use of human annotations. The dataset included 350 children with normal EEGs and 597 children with interictal abnormalities, and it was divided into training data (n=452), validation data (n=112), and testing data (n=383). Spectrograms from each EEG signal channel were used as input for five pre-trained transfer learning models (Inception, ResNet, DenseNet, VGG16 and VGG19) and traditional feature-based machine learning methods were developed as a benchmark. A comparison was made between a transfer learning-based method and a traditional feature-based machine learning algorithm. The results revealed that the transfer learning-based method outperformed the feature-based machine learning methods, achieving an accuracy of 77%, an F1 score of 0.85, and a balanced accuracy of 77% on the test set. Our transfer learning-based method can identify interictal abnormalities without the need for feature estimation by domain experts or human annotations. This method can assist in the recognition of EEGs with epileptiform abnormalities in children thereby facilitating the clinical diagnosis of epilepsy.
doi_str_mv 10.1109/ACCESS.2024.3415786
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_3072327544</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><ieee_id>10559807</ieee_id><doaj_id>oai_doaj_org_article_e90acf627903434786153a3a73c9c670</doaj_id><sourcerecordid>3072327544</sourcerecordid><originalsourceid>FETCH-LOGICAL-c289t-35c4ca32ee353a4c02d5a2c8d8671e2ab5f0fdb47cd1382284b07dafdf20c4f23</originalsourceid><addsrcrecordid>eNpNUU1LAzEQXURBUX-BHgKeW_O1m91jKasWCgoqHsM0mWjKuqlJPPjvja5I5zLDY96bx7yqumB0zhjtrhfLZf_4OOeUy7mQrFZtc1CdcNZ0M1GL5nBvPq7OU9rSUm2BanVSuacIY3IYyRohjn58JS5Ekt-QrCyO2TtvIPswkuDIA6D1kKM3pO9vE3nx-Y2sxowFyTCQfucH3BVOiO9ksRlLg8Fnj-msOnIwJDz_66fV803_tLybre9vV8vFemZ42-Xi0UgDgiMWtyAN5bYGblrbNoohh03tqLMbqYxlouW8lRuqLDjrODXScXFarSZdG2Crd9G_Q_zSAbz-BUJ81RCzNwNq7CgY13DVUSGFLF9j5aYAJUxnGkWL1tWktYvh4xNT1tvwGcdiXwuquOCqlrJsiWnLxJBSRPd_lVH9k4-e8tE_-ei_fArrcmJ5RNxj1HXXUiW-AdmgjDM</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3072327544</pqid></control><display><type>article</type><title>Transfer Learning for the Identification of Paediatric EEGs With Interictal Epileptiform Abnormalities</title><source>IEEE Xplore Open Access Journals</source><creator>Wei, Lan ; Mchugh, John C. ; Mooney, Catherine</creator><creatorcontrib>Wei, Lan ; Mchugh, John C. ; Mooney, Catherine</creatorcontrib><description>EEG is a test that helps in the clinical diagnosis of epilepsy. Epilepsy diagnosis is facilitated by establishing the presence of interictal epileptiform abnormalities on EEG, which predict an increased risk of seizure. The identification of interictal epileptiform discharges is a time-consuming task that requires highly-trained experts. A method to assist in the recognition of EEGs with epileptiform abnormalities was developed using transfer learning on multiple channels of paediatric EEGs, without the use of human annotations. The dataset included 350 children with normal EEGs and 597 children with interictal abnormalities, and it was divided into training data (n=452), validation data (n=112), and testing data (n=383). Spectrograms from each EEG signal channel were used as input for five pre-trained transfer learning models (Inception, ResNet, DenseNet, VGG16 and VGG19) and traditional feature-based machine learning methods were developed as a benchmark. A comparison was made between a transfer learning-based method and a traditional feature-based machine learning algorithm. The results revealed that the transfer learning-based method outperformed the feature-based machine learning methods, achieving an accuracy of 77%, an F1 score of 0.85, and a balanced accuracy of 77% on the test set. Our transfer learning-based method can identify interictal abnormalities without the need for feature estimation by domain experts or human annotations. This method can assist in the recognition of EEGs with epileptiform abnormalities in children thereby facilitating the clinical diagnosis of epilepsy.</description><identifier>ISSN: 2169-3536</identifier><identifier>EISSN: 2169-3536</identifier><identifier>DOI: 10.1109/ACCESS.2024.3415786</identifier><identifier>CODEN: IAECCG</identifier><language>eng</language><publisher>Piscataway: IEEE</publisher><subject>Abnormalities ; Algorithms ; Annotations ; Brain modeling ; Diagnosis ; EEG ; Electroencephalography ; Epilepsy ; Machine learning ; paediatric ; Pediatrics ; Recognition ; Recording ; Spectrogram ; Spectrograms ; Transfer learning</subject><ispartof>IEEE access, 2024, Vol.12, p.86073-86082</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. (IEEE) 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c289t-35c4ca32ee353a4c02d5a2c8d8671e2ab5f0fdb47cd1382284b07dafdf20c4f23</cites><orcidid>0000-0002-7236-3965 ; 0000-0002-7696-1364</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://ieeexplore.ieee.org/document/10559807$$EHTML$$P50$$Gieee$$Hfree_for_read</linktohtml><link.rule.ids>314,777,781,4010,27614,27904,27905,27906,54914</link.rule.ids></links><search><creatorcontrib>Wei, Lan</creatorcontrib><creatorcontrib>Mchugh, John C.</creatorcontrib><creatorcontrib>Mooney, Catherine</creatorcontrib><title>Transfer Learning for the Identification of Paediatric EEGs With Interictal Epileptiform Abnormalities</title><title>IEEE access</title><addtitle>Access</addtitle><description>EEG is a test that helps in the clinical diagnosis of epilepsy. Epilepsy diagnosis is facilitated by establishing the presence of interictal epileptiform abnormalities on EEG, which predict an increased risk of seizure. The identification of interictal epileptiform discharges is a time-consuming task that requires highly-trained experts. A method to assist in the recognition of EEGs with epileptiform abnormalities was developed using transfer learning on multiple channels of paediatric EEGs, without the use of human annotations. The dataset included 350 children with normal EEGs and 597 children with interictal abnormalities, and it was divided into training data (n=452), validation data (n=112), and testing data (n=383). Spectrograms from each EEG signal channel were used as input for five pre-trained transfer learning models (Inception, ResNet, DenseNet, VGG16 and VGG19) and traditional feature-based machine learning methods were developed as a benchmark. A comparison was made between a transfer learning-based method and a traditional feature-based machine learning algorithm. The results revealed that the transfer learning-based method outperformed the feature-based machine learning methods, achieving an accuracy of 77%, an F1 score of 0.85, and a balanced accuracy of 77% on the test set. Our transfer learning-based method can identify interictal abnormalities without the need for feature estimation by domain experts or human annotations. This method can assist in the recognition of EEGs with epileptiform abnormalities in children thereby facilitating the clinical diagnosis of epilepsy.</description><subject>Abnormalities</subject><subject>Algorithms</subject><subject>Annotations</subject><subject>Brain modeling</subject><subject>Diagnosis</subject><subject>EEG</subject><subject>Electroencephalography</subject><subject>Epilepsy</subject><subject>Machine learning</subject><subject>paediatric</subject><subject>Pediatrics</subject><subject>Recognition</subject><subject>Recording</subject><subject>Spectrogram</subject><subject>Spectrograms</subject><subject>Transfer learning</subject><issn>2169-3536</issn><issn>2169-3536</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>ESBDL</sourceid><sourceid>DOA</sourceid><recordid>eNpNUU1LAzEQXURBUX-BHgKeW_O1m91jKasWCgoqHsM0mWjKuqlJPPjvja5I5zLDY96bx7yqumB0zhjtrhfLZf_4OOeUy7mQrFZtc1CdcNZ0M1GL5nBvPq7OU9rSUm2BanVSuacIY3IYyRohjn58JS5Ekt-QrCyO2TtvIPswkuDIA6D1kKM3pO9vE3nx-Y2sxowFyTCQfucH3BVOiO9ksRlLg8Fnj-msOnIwJDz_66fV803_tLybre9vV8vFemZ42-Xi0UgDgiMWtyAN5bYGblrbNoohh03tqLMbqYxlouW8lRuqLDjrODXScXFarSZdG2Crd9G_Q_zSAbz-BUJ81RCzNwNq7CgY13DVUSGFLF9j5aYAJUxnGkWL1tWktYvh4xNT1tvwGcdiXwuquOCqlrJsiWnLxJBSRPd_lVH9k4-e8tE_-ei_fArrcmJ5RNxj1HXXUiW-AdmgjDM</recordid><startdate>2024</startdate><enddate>2024</enddate><creator>Wei, Lan</creator><creator>Mchugh, John C.</creator><creator>Mooney, Catherine</creator><general>IEEE</general><general>The Institute of Electrical and Electronics Engineers, Inc. (IEEE)</general><scope>97E</scope><scope>ESBDL</scope><scope>RIA</scope><scope>RIE</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SC</scope><scope>7SP</scope><scope>7SR</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>JQ2</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-7236-3965</orcidid><orcidid>https://orcid.org/0000-0002-7696-1364</orcidid></search><sort><creationdate>2024</creationdate><title>Transfer Learning for the Identification of Paediatric EEGs With Interictal Epileptiform Abnormalities</title><author>Wei, Lan ; Mchugh, John C. ; Mooney, Catherine</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c289t-35c4ca32ee353a4c02d5a2c8d8671e2ab5f0fdb47cd1382284b07dafdf20c4f23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Abnormalities</topic><topic>Algorithms</topic><topic>Annotations</topic><topic>Brain modeling</topic><topic>Diagnosis</topic><topic>EEG</topic><topic>Electroencephalography</topic><topic>Epilepsy</topic><topic>Machine learning</topic><topic>paediatric</topic><topic>Pediatrics</topic><topic>Recognition</topic><topic>Recording</topic><topic>Spectrogram</topic><topic>Spectrograms</topic><topic>Transfer learning</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wei, Lan</creatorcontrib><creatorcontrib>Mchugh, John C.</creatorcontrib><creatorcontrib>Mooney, Catherine</creatorcontrib><collection>IEEE All-Society Periodicals Package (ASPP) 2005–Present</collection><collection>IEEE Xplore Open Access Journals</collection><collection>IEEE All-Society Periodicals Package (ASPP) 1998-Present</collection><collection>IEEE Xplore</collection><collection>CrossRef</collection><collection>Computer and Information Systems Abstracts</collection><collection>Electronics &amp; Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts – Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>IEEE access</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wei, Lan</au><au>Mchugh, John C.</au><au>Mooney, Catherine</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transfer Learning for the Identification of Paediatric EEGs With Interictal Epileptiform Abnormalities</atitle><jtitle>IEEE access</jtitle><stitle>Access</stitle><date>2024</date><risdate>2024</risdate><volume>12</volume><spage>86073</spage><epage>86082</epage><pages>86073-86082</pages><issn>2169-3536</issn><eissn>2169-3536</eissn><coden>IAECCG</coden><abstract>EEG is a test that helps in the clinical diagnosis of epilepsy. Epilepsy diagnosis is facilitated by establishing the presence of interictal epileptiform abnormalities on EEG, which predict an increased risk of seizure. The identification of interictal epileptiform discharges is a time-consuming task that requires highly-trained experts. A method to assist in the recognition of EEGs with epileptiform abnormalities was developed using transfer learning on multiple channels of paediatric EEGs, without the use of human annotations. The dataset included 350 children with normal EEGs and 597 children with interictal abnormalities, and it was divided into training data (n=452), validation data (n=112), and testing data (n=383). Spectrograms from each EEG signal channel were used as input for five pre-trained transfer learning models (Inception, ResNet, DenseNet, VGG16 and VGG19) and traditional feature-based machine learning methods were developed as a benchmark. A comparison was made between a transfer learning-based method and a traditional feature-based machine learning algorithm. The results revealed that the transfer learning-based method outperformed the feature-based machine learning methods, achieving an accuracy of 77%, an F1 score of 0.85, and a balanced accuracy of 77% on the test set. Our transfer learning-based method can identify interictal abnormalities without the need for feature estimation by domain experts or human annotations. This method can assist in the recognition of EEGs with epileptiform abnormalities in children thereby facilitating the clinical diagnosis of epilepsy.</abstract><cop>Piscataway</cop><pub>IEEE</pub><doi>10.1109/ACCESS.2024.3415786</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-7236-3965</orcidid><orcidid>https://orcid.org/0000-0002-7696-1364</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2169-3536
ispartof IEEE access, 2024, Vol.12, p.86073-86082
issn 2169-3536
2169-3536
language eng
recordid cdi_proquest_journals_3072327544
source IEEE Xplore Open Access Journals
subjects Abnormalities
Algorithms
Annotations
Brain modeling
Diagnosis
EEG
Electroencephalography
Epilepsy
Machine learning
paediatric
Pediatrics
Recognition
Recording
Spectrogram
Spectrograms
Transfer learning
title Transfer Learning for the Identification of Paediatric EEGs With Interictal Epileptiform Abnormalities
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-17T23%3A06%3A05IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Transfer%20Learning%20for%20the%20Identification%20of%20Paediatric%20EEGs%20With%20Interictal%20Epileptiform%20Abnormalities&rft.jtitle=IEEE%20access&rft.au=Wei,%20Lan&rft.date=2024&rft.volume=12&rft.spage=86073&rft.epage=86082&rft.pages=86073-86082&rft.issn=2169-3536&rft.eissn=2169-3536&rft.coden=IAECCG&rft_id=info:doi/10.1109/ACCESS.2024.3415786&rft_dat=%3Cproquest_cross%3E3072327544%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c289t-35c4ca32ee353a4c02d5a2c8d8671e2ab5f0fdb47cd1382284b07dafdf20c4f23%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=3072327544&rft_id=info:pmid/&rft_ieee_id=10559807&rfr_iscdi=true