Genetic stability of cryopreserved shoot tips of Rubus germplasm

• Published in: In vitro cellular & developmental biology. Plant 2010-06, Vol.46 (3), p.246-256
• Main Authors: Castillo, Nina Rosa F, Bassil, Nahla V, Wada, Sugae, Reed, Barbara M
• Format: Article
• Language: English
• Subjects: Biomedical and Life Sciences; Cell Biology; Cell division; Cryopreservation; Cultivars; Deoxyribonucleic acid; Developmental Biology; DNA; DNA methylation; Epigenetics; Flowers & plants; Genetic screening; Genetic stability; Genetic variation; Genetics; Genotypes; Greenhouses; Life Sciences; Methylation; Nitrogen; Plant Breeding/Biotechnology; Plant Genetics and Genomics; Plant Sciences; Plants; Polymorphism; Shoots; Somaclonal variation; SOMATIC CELL GENETICS; Studies
• ISSN: 1054-5476; 1475-2689
• DOI: 10.1007/s11627-009-9265-z

Questions often arise concerning the genetic stability of plant materials stored in liquid nitrogen for long time periods. This study examined the genetic stability of cryopreserved shoot tips of Rubus germplasm that were stored in liquid nitrogen for more than 12 yr, then rewarmed and regrown. We analyzed the genetic stability of Rubus grabowskii, two blackberry cultivars (“Hillemeyer” and ‘Silvan'), and one raspberry cultivar (“Mandarin”) as in vitro shoots and as field-grown plants. No morphological differences were observed in greenhouse-grown cryopreserved plants when compared to the control mother plants. In the field, cryopreserved plants appeared similar but were more vigorous than mother plants, with larger leaves, fruit, and seeds. Single sequence repeats (SSR) and amplified fragment length polymorphism (AFLP) analyses were performed on shoots immediately after recovery from cryopreservation and on shoots subcultured for 7 mo before analysis. Ten SSR primers developed from “Marion” and “Meeker” microsatellite-enriched libraries amplified one to 15 alleles per locus, with an average of seven alleles and a total of 70 alleles in the four genotypes tested. No SSR polymorphisms were observed between cryopreserved shoots and the corresponding mother plants regardless of subculture. Although no polymorphisms were detected in shoots analyzed immediately after recovery from cryopreservation, AFLP polymorphisms were detected in three of the four Rubus genotypes after they were subcultured for 7 mo. Field-grown plants from the polymorphic shoot tips of R. grabowskii and ‘Silvan' displayed the same AFLP fingerprints as their corresponding mother plants. Only long-cultured in vitro shoot tips displayed polymorphisms in vitro, and they were no longer detected when the plants were grown ex vitro. The transitory nature of these polymorphisms should be carefully considered when monitoring for genetic stability.