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Fine mapping of qSTV11 ^sup KAS^, a major QTL for rice stripe disease resistance
Rice stripe disease, caused by rice stripe virus (RSV), is one of the most serious diseases in temperate rice-growing areas. In the present study, we performed quantitative trait locus (QTL) analysis for RSV resistance using 98 backcross inbred lines derived from the cross between the highly resista...
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Published in: | Theoretical and applied genetics 2011-05, Vol.122 (8), p.1591 |
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creator | Zhang, Ying-xin Wang, Qi Jiang, Ling Liu, Ling-long Wang, Bao-xiang Shen, Ying-yue Cheng, Xia-nian Wan, Jian-min |
description | Rice stripe disease, caused by rice stripe virus (RSV), is one of the most serious diseases in temperate rice-growing areas. In the present study, we performed quantitative trait locus (QTL) analysis for RSV resistance using 98 backcross inbred lines derived from the cross between the highly resistant variety, Kasalath, and the highly susceptible variety, Nipponbare. Under artificial inoculation in the greenhouse, two QTLs for RSV resistance, designated qSTV7 and qSTV11 ^sup KAS^, were detected on chromosomes 7 and 11 respectively, whereas only one QTL was detected in the same location of chromosome 11 under natural inoculation in the field. The stability of qSTV11 ^sup KAS^ was validated using 39 established chromosome segment substitution lines. Fine mapping of qSTV11 ^sup KAS^ was carried out using 372 BC^sub 3^F^sub 2:3^ recombinants and 399 BC^sub 3^F^sub 3:4^ lines selected from 7,018 BC^sub 3^F^sub 2^ plants of the cross SL-234/Koshihikari. The qSTV11 ^sup KAS^ was localized to a 39.2 kb region containing seven annotated genes. The most likely candidate gene, LOC_Os11g30910, is predicted to encode a sulfotransferase domain-containing protein. The predicted protein encoded by the Kasalath allele differs from Nipponbare by a single amino acid substitution and the deletion of two amino acids within the sulfotransferase domain. Marker-resistance association analysis revealed that the markers L104-155 bp and R48-194 bp were highly correlated with RSV resistance in the 148 landrace varieties. These results provide a basis for the cloning of qSTV11 ^sup KAS^, and the markers may be used for molecular breeding of RSV resistant rice varieties.[PUBLICATION ABSTRACT] |
doi_str_mv | 10.1007/s00122-011-1557-0 |
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In the present study, we performed quantitative trait locus (QTL) analysis for RSV resistance using 98 backcross inbred lines derived from the cross between the highly resistant variety, Kasalath, and the highly susceptible variety, Nipponbare. Under artificial inoculation in the greenhouse, two QTLs for RSV resistance, designated qSTV7 and qSTV11 ^sup KAS^, were detected on chromosomes 7 and 11 respectively, whereas only one QTL was detected in the same location of chromosome 11 under natural inoculation in the field. The stability of qSTV11 ^sup KAS^ was validated using 39 established chromosome segment substitution lines. Fine mapping of qSTV11 ^sup KAS^ was carried out using 372 BC^sub 3^F^sub 2:3^ recombinants and 399 BC^sub 3^F^sub 3:4^ lines selected from 7,018 BC^sub 3^F^sub 2^ plants of the cross SL-234/Koshihikari. The qSTV11 ^sup KAS^ was localized to a 39.2 kb region containing seven annotated genes. The most likely candidate gene, LOC_Os11g30910, is predicted to encode a sulfotransferase domain-containing protein. The predicted protein encoded by the Kasalath allele differs from Nipponbare by a single amino acid substitution and the deletion of two amino acids within the sulfotransferase domain. Marker-resistance association analysis revealed that the markers L104-155 bp and R48-194 bp were highly correlated with RSV resistance in the 148 landrace varieties. These results provide a basis for the cloning of qSTV11 ^sup KAS^, and the markers may be used for molecular breeding of RSV resistant rice varieties.[PUBLICATION ABSTRACT]</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-011-1557-0</identifier><language>eng</language><publisher>Heidelberg: Springer Nature B.V</publisher><subject>Chromosomes ; Crop diseases ; Genes ; Genomes ; Rice</subject><ispartof>Theoretical and applied genetics, 2011-05, Vol.122 (8), p.1591</ispartof><rights>Springer-Verlag 2011</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Zhang, Ying-xin</creatorcontrib><creatorcontrib>Wang, Qi</creatorcontrib><creatorcontrib>Jiang, Ling</creatorcontrib><creatorcontrib>Liu, Ling-long</creatorcontrib><creatorcontrib>Wang, Bao-xiang</creatorcontrib><creatorcontrib>Shen, Ying-yue</creatorcontrib><creatorcontrib>Cheng, Xia-nian</creatorcontrib><creatorcontrib>Wan, Jian-min</creatorcontrib><title>Fine mapping of qSTV11 ^sup KAS^, a major QTL for rice stripe disease resistance</title><title>Theoretical and applied genetics</title><description>Rice stripe disease, caused by rice stripe virus (RSV), is one of the most serious diseases in temperate rice-growing areas. In the present study, we performed quantitative trait locus (QTL) analysis for RSV resistance using 98 backcross inbred lines derived from the cross between the highly resistant variety, Kasalath, and the highly susceptible variety, Nipponbare. Under artificial inoculation in the greenhouse, two QTLs for RSV resistance, designated qSTV7 and qSTV11 ^sup KAS^, were detected on chromosomes 7 and 11 respectively, whereas only one QTL was detected in the same location of chromosome 11 under natural inoculation in the field. The stability of qSTV11 ^sup KAS^ was validated using 39 established chromosome segment substitution lines. Fine mapping of qSTV11 ^sup KAS^ was carried out using 372 BC^sub 3^F^sub 2:3^ recombinants and 399 BC^sub 3^F^sub 3:4^ lines selected from 7,018 BC^sub 3^F^sub 2^ plants of the cross SL-234/Koshihikari. The qSTV11 ^sup KAS^ was localized to a 39.2 kb region containing seven annotated genes. The most likely candidate gene, LOC_Os11g30910, is predicted to encode a sulfotransferase domain-containing protein. The predicted protein encoded by the Kasalath allele differs from Nipponbare by a single amino acid substitution and the deletion of two amino acids within the sulfotransferase domain. Marker-resistance association analysis revealed that the markers L104-155 bp and R48-194 bp were highly correlated with RSV resistance in the 148 landrace varieties. These results provide a basis for the cloning of qSTV11 ^sup KAS^, and the markers may be used for molecular breeding of RSV resistant rice varieties.[PUBLICATION ABSTRACT]</description><subject>Chromosomes</subject><subject>Crop diseases</subject><subject>Genes</subject><subject>Genomes</subject><subject>Rice</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><recordid>eNqNysFKw0AQgOFFKpiqD-Bt8NzVmUk2aY9SLAU9KAkeW5Y6kQ2abHeS9zcHH8DTf_h-Y-4IHwixelREYrZIZMm5yuKFyajI2TIXvDAZYoHWVY6vzFK1Q0R2mGfmbRd6gR8fY-i_YGjhXDcfRHDQKcLLU31YgZ-5GxK8N6_Qzk3hJKBjClHgM6h4FUiiQUffn-TGXLb-W-X2r9fmfvfcbPc2puE8iY7HbphSP9NxXW5KLtFx_q_pFycnQt8</recordid><startdate>20110501</startdate><enddate>20110501</enddate><creator>Zhang, Ying-xin</creator><creator>Wang, Qi</creator><creator>Jiang, Ling</creator><creator>Liu, Ling-long</creator><creator>Wang, Bao-xiang</creator><creator>Shen, Ying-yue</creator><creator>Cheng, Xia-nian</creator><creator>Wan, Jian-min</creator><general>Springer Nature B.V</general><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope></search><sort><creationdate>20110501</creationdate><title>Fine mapping of qSTV11 ^sup KAS^, a major QTL for rice stripe disease resistance</title><author>Zhang, Ying-xin ; Wang, Qi ; Jiang, Ling ; Liu, Ling-long ; Wang, Bao-xiang ; Shen, Ying-yue ; Cheng, Xia-nian ; Wan, Jian-min</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-proquest_journals_8696260523</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Chromosomes</topic><topic>Crop diseases</topic><topic>Genes</topic><topic>Genomes</topic><topic>Rice</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Ying-xin</creatorcontrib><creatorcontrib>Wang, Qi</creatorcontrib><creatorcontrib>Jiang, Ling</creatorcontrib><creatorcontrib>Liu, Ling-long</creatorcontrib><creatorcontrib>Wang, Bao-xiang</creatorcontrib><creatorcontrib>Shen, Ying-yue</creatorcontrib><creatorcontrib>Cheng, Xia-nian</creatorcontrib><creatorcontrib>Wan, Jian-min</creatorcontrib><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Ying-xin</au><au>Wang, Qi</au><au>Jiang, Ling</au><au>Liu, Ling-long</au><au>Wang, Bao-xiang</au><au>Shen, Ying-yue</au><au>Cheng, Xia-nian</au><au>Wan, Jian-min</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fine mapping of qSTV11 ^sup KAS^, a major QTL for rice stripe disease resistance</atitle><jtitle>Theoretical and applied genetics</jtitle><date>2011-05-01</date><risdate>2011</risdate><volume>122</volume><issue>8</issue><spage>1591</spage><pages>1591-</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><abstract>Rice stripe disease, caused by rice stripe virus (RSV), is one of the most serious diseases in temperate rice-growing areas. In the present study, we performed quantitative trait locus (QTL) analysis for RSV resistance using 98 backcross inbred lines derived from the cross between the highly resistant variety, Kasalath, and the highly susceptible variety, Nipponbare. Under artificial inoculation in the greenhouse, two QTLs for RSV resistance, designated qSTV7 and qSTV11 ^sup KAS^, were detected on chromosomes 7 and 11 respectively, whereas only one QTL was detected in the same location of chromosome 11 under natural inoculation in the field. The stability of qSTV11 ^sup KAS^ was validated using 39 established chromosome segment substitution lines. Fine mapping of qSTV11 ^sup KAS^ was carried out using 372 BC^sub 3^F^sub 2:3^ recombinants and 399 BC^sub 3^F^sub 3:4^ lines selected from 7,018 BC^sub 3^F^sub 2^ plants of the cross SL-234/Koshihikari. The qSTV11 ^sup KAS^ was localized to a 39.2 kb region containing seven annotated genes. The most likely candidate gene, LOC_Os11g30910, is predicted to encode a sulfotransferase domain-containing protein. The predicted protein encoded by the Kasalath allele differs from Nipponbare by a single amino acid substitution and the deletion of two amino acids within the sulfotransferase domain. Marker-resistance association analysis revealed that the markers L104-155 bp and R48-194 bp were highly correlated with RSV resistance in the 148 landrace varieties. These results provide a basis for the cloning of qSTV11 ^sup KAS^, and the markers may be used for molecular breeding of RSV resistant rice varieties.[PUBLICATION ABSTRACT]</abstract><cop>Heidelberg</cop><pub>Springer Nature B.V</pub><doi>10.1007/s00122-011-1557-0</doi></addata></record> |
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subjects | Chromosomes Crop diseases Genes Genomes Rice |
title | Fine mapping of qSTV11 ^sup KAS^, a major QTL for rice stripe disease resistance |
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