Agar degradation by microorganisms and agar-degrading enzymes

• Published in: Applied microbiology and biotechnology 2012-05, Vol.94 (4), p.917-930
• Main Authors: Chi, Won-Jae, Chang, Yong-Keun, Hong, Soon-Kwang
• Format: Article
• Language: English
• Subjects: Agar; Agar - metabolism; Algae; Alternative energy sources; Alteromonadaceae - enzymology; Biodegradation; Biomass energy; Biomedical and Life Sciences; Biotechnology; Chemical analysis; Energy sources; Enzymes; Functional foods & nutraceuticals; Galactose; Geologic Sediments - microbiology; Global warming; Glycoside Hydrolases - chemistry; Glycoside Hydrolases - genetics; Glycoside Hydrolases - metabolism; Hydrolases; Hydrolysis; Life Sciences; Lignocellulose; Marine sediments; Microbial Genetics and Genomics; Microbiology; Microorganisms; Mini-Review; Protein Conformation; Sea-water; Seawater; Seawater - microbiology; Sediments; Streptomyces coelicolor; Streptomyces coelicolor - enzymology; Studies; Sulfates; Water analysis
• ISSN: 0175-7598; 1432-0614
• DOI: 10.1007/s00253-012-4023-2

Agar is a mixture of heterogeneous galactans, mainly composed of 3,6-anhydro- l -galactoses (or l -galactose-6-sulfates) d -galactoses and l -galactoses (routinely in the forms of 3,6-anhydro- l -galactoses or l -galactose-6-sulfates) alternately linked by β-(1,4) and α-(1,3) linkages. It is a major component of the cell walls of red algae and has been used in a variety of laboratory and industrial applications, owing to its jellifying properties. Many microorganisms that can hydrolyze and metabolize agar as a carbon and energy source have been identified in seawater and marine sediments. Agarolytic microorganisms commonly produce agarases, which catalyze the hydrolysis of agar. Numerous agarases have been identified in microorganisms of various genera. They are classified according to their cleavage pattern into three types—α-agarase, β-agarase, and β-porphyranase. Although, in a broad sense, many other agarases are involved in complete hydrolysis of agar, most of those identified are β-agarases. In this article we review agarolytic microorganisms and their agar-hydrolyzing systems, covering β-agarases as well as α-agarases, α-neoagarobiose hydrolases, and β-porphyranases, with emphasis on the recent discoveries. We also present an overview of the biochemical and structural characteristics of the various types of agarases. Further, we summarize and compare the agar-hydrolyzing systems of two specific microorganisms: Gram-negative Saccharophagus degradans 2–40 and Gram-positive Streptomyces coelicolor A3(2). We conclude with a brief discussion of the importance of agarases and their possible future application in producing oligosaccharides with various nutraceutical activities and in sustainably generating stock chemicals for biorefinement and bioenergy.