Complex rearrangement involving 9p deletion and duplication in a syndromic patient: Genotype/phenotype correlation and review of the literature

• Published in: Gene 2012-07, Vol.502 (1), p.40-45
• Main Authors: Recalcati, Maria Paola, Bellini, Melissa, Norsa, Lorenzo, Ballarati, Lucia, Caselli, Rossella, Russo, Silvia, Larizza, Lidia, Giardino, Daniela
• Format: Article
• Language: English
• Subjects: 9p deletion syndrome; 9p duplication syndrome; Abnormal Karyotype; Abnormalities, Multiple - diagnosis; Abnormalities, Multiple - genetics; Array-CGH; boys; Child; chromosome 9; Chromosome 9p complex rearrangement; Chromosome Banding; Chromosome Deletion; chromosomes; Chromosomes, Human, Pair 9 - genetics; Comparative Genomic Hybridization; cytogenetic analysis; FISH; Genetic Association Studies; genotype; Genotypes; Humans; Hypoplasia; In Situ Hybridization, Fluorescence; Literature reviews; Male; Mental retardation; Molecular Diagnostic Techniques; Motor skill learning; nose; patients; phenotype; Phenotype–genotype correlation; Syndrome; Trisomy - diagnosis; Trisomy - genetics
• ISSN: 0378-1119; 1879-0038
• DOI: 10.1016/j.gene.2012.04.030

We describe a 7-year-old boy with a complex rearrangement involving the whole short arm of chromosome 9 defined by means of molecular cytogenetic techniques. The rearrangement is characterized by a 18.3Mb terminal deletion associated with the inverted duplication of the adjacent 21,5Mb region. The patient shows developmental delay, psychomotor retardation, hypotonia. Other typical features of 9p deletion (genital disorders, midface hypoplasia, long philtrum) and of the 9p duplication (brachycephaly, down slanting palpebral fissures and bulbous nasal tip) are present. Interestingly, he does not show trigonocephaly that is the most prominent dysmorphism associated with the deletion of the short arm of chromosome 9. Patient's phenotype and the underlying flanking opposite 9p imbalances are compared with that of reported patients and the proposed critical regions for 9p deletion and 9p duplication syndromes. ► We describe a boy with an inverted duplication and a terminal deletion of 9p ► Rearrangement has been finely defined by means of array-CGH and FISH ► Boy shows features typical of the 9p duplication and 9p deletion syndromes ► A genotype/phenotype correlation has been performed for both syndromes ► Patient's phenotype and rearrangement are compared with previously reported patients