Loading…

Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)

This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloropla...

Full description

Saved in:
Bibliographic Details
Published in:Molecular ecology 2012-06, Vol.21 (11), p.2743-2760
Main Authors: CAETANO, S., CURRAT, M., PENNINGTON, R. T., PRADO, D., EXCOFFIER, L., NACIRI, Y.
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53
cites cdi_FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53
container_end_page 2760
container_issue 11
container_start_page 2743
container_title Molecular ecology
container_volume 21
creator CAETANO, S.
CURRAT, M.
PENNINGTON, R. T.
PRADO, D.
EXCOFFIER, L.
NACIRI, Y.
description This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloroplast spacers and six microsatellite loci, reveal significant differences between two mainland regions separated by the Andes mountains (Inter Andean vs. Pacific Coast) as well as a significant genetic differentiation of island populations. Microsatellites identify two distinct geographical clusters, the Galápagos and the mainland, and chloroplast markers show a private haplotype in the Galápagos. The nuclear distinctiveness of the Inter Andean populations suggests current restricted pollen flow, but chloroplast points to cross‐Andean dispersals via seeds, indicating that the Andes might not be an effective biogeographical barrier. The ABC analyses clearly point to the colonization of the Galápagos within the last 160 000 years and possibly as recently as 4750 years ago (475 generations). Founder events associated with colonization of the two islands where the species occurs are detected, with Española having been colonized after Floreana. We discuss two nonmutually exclusive possibilities for the colonization of the Galápagos, recent natural dispersal vs. human introduction.
doi_str_mv 10.1111/j.1365-294X.2012.05562.x
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1024933612</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2668273781</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53</originalsourceid><addsrcrecordid>eNqNkc1u1DAUhS1ERYfCKyBLbMoiqX9iJ1mwoKN2AE2LhArTnWU7NyVDJp7aiZjhbXgWXgxnpsyiq3phXx1_5_paByFMSUrjOlumlEuRsDK7TRmhLCVCSJZunqHJ4eI5mpBSsoSSgh-jlyEsCaGcCfECHTMmSFnQfIIWX8FC12PrWtc1v3XfuA67Gvc_AM90-_fPWt-5gM12p_Qeogyurr0DjcO66VzQ-LO29yk-ncPdsNop8O4VOqp1G-D1w3mCvl1e3Ew_JvMvs0_TD_PEZrKIw4m414LIwnBiKalqIa1kvDLU0srI0nBeSmGgjuNCpimHSkJeGUZylhvBT9Dpvu_au_sBQq9WTbDQtroDNwRFCctKziVlT0FJIfJsh759hC7d4Lv4kUhRIYpMcBqpYk9Z70LwUKu1b1babyOkxpzUUo1xqDEONeakdjmpTbS-eXhgMCuoDsb_wUTg_R741bSwfXJjdXUxHavoT_b-JvSwOfi1_6lkznOhFtcz9f1qcTO9nV-qc_4P2hCu_Q</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1015584531</pqid></control><display><type>article</type><title>Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)</title><source>Wiley-Blackwell Read &amp; Publish Collection</source><creator>CAETANO, S. ; CURRAT, M. ; PENNINGTON, R. T. ; PRADO, D. ; EXCOFFIER, L. ; NACIRI, Y.</creator><creatorcontrib>CAETANO, S. ; CURRAT, M. ; PENNINGTON, R. T. ; PRADO, D. ; EXCOFFIER, L. ; NACIRI, Y.</creatorcontrib><description>This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloroplast spacers and six microsatellite loci, reveal significant differences between two mainland regions separated by the Andes mountains (Inter Andean vs. Pacific Coast) as well as a significant genetic differentiation of island populations. Microsatellites identify two distinct geographical clusters, the Galápagos and the mainland, and chloroplast markers show a private haplotype in the Galápagos. The nuclear distinctiveness of the Inter Andean populations suggests current restricted pollen flow, but chloroplast points to cross‐Andean dispersals via seeds, indicating that the Andes might not be an effective biogeographical barrier. The ABC analyses clearly point to the colonization of the Galápagos within the last 160 000 years and possibly as recently as 4750 years ago (475 generations). Founder events associated with colonization of the two islands where the species occurs are detected, with Española having been colonized after Floreana. We discuss two nonmutually exclusive possibilities for the colonization of the Galápagos, recent natural dispersal vs. human introduction.</description><identifier>ISSN: 0962-1083</identifier><identifier>EISSN: 1365-294X</identifier><identifier>DOI: 10.1111/j.1365-294X.2012.05562.x</identifier><identifier>PMID: 22509817</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>ABC analysis ; Bayes Theorem ; Bayesian analysis ; Biogeography ; chloroplast ; Chloroplasts ; Chloroplasts - genetics ; Ecuador ; Fabaceae - genetics ; Founder Effect ; founder events ; Genetic diversity ; genetic structure ; Genetic Variation ; Genetics ; Haplotypes ; Introduced Species ; Islands ; long-distance dispersal ; Microsatellite Repeats ; microsatellites ; Models, Genetic ; Molecular Sequence Data ; Peru ; Phylogeography ; Time Factors ; Trees</subject><ispartof>Molecular ecology, 2012-06, Vol.21 (11), p.2743-2760</ispartof><rights>2012 Blackwell Publishing Ltd</rights><rights>2012 Blackwell Publishing Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53</citedby><cites>FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22509817$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>CAETANO, S.</creatorcontrib><creatorcontrib>CURRAT, M.</creatorcontrib><creatorcontrib>PENNINGTON, R. T.</creatorcontrib><creatorcontrib>PRADO, D.</creatorcontrib><creatorcontrib>EXCOFFIER, L.</creatorcontrib><creatorcontrib>NACIRI, Y.</creatorcontrib><title>Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)</title><title>Molecular ecology</title><addtitle>Mol Ecol</addtitle><description>This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloroplast spacers and six microsatellite loci, reveal significant differences between two mainland regions separated by the Andes mountains (Inter Andean vs. Pacific Coast) as well as a significant genetic differentiation of island populations. Microsatellites identify two distinct geographical clusters, the Galápagos and the mainland, and chloroplast markers show a private haplotype in the Galápagos. The nuclear distinctiveness of the Inter Andean populations suggests current restricted pollen flow, but chloroplast points to cross‐Andean dispersals via seeds, indicating that the Andes might not be an effective biogeographical barrier. The ABC analyses clearly point to the colonization of the Galápagos within the last 160 000 years and possibly as recently as 4750 years ago (475 generations). Founder events associated with colonization of the two islands where the species occurs are detected, with Española having been colonized after Floreana. We discuss two nonmutually exclusive possibilities for the colonization of the Galápagos, recent natural dispersal vs. human introduction.</description><subject>ABC analysis</subject><subject>Bayes Theorem</subject><subject>Bayesian analysis</subject><subject>Biogeography</subject><subject>chloroplast</subject><subject>Chloroplasts</subject><subject>Chloroplasts - genetics</subject><subject>Ecuador</subject><subject>Fabaceae - genetics</subject><subject>Founder Effect</subject><subject>founder events</subject><subject>Genetic diversity</subject><subject>genetic structure</subject><subject>Genetic Variation</subject><subject>Genetics</subject><subject>Haplotypes</subject><subject>Introduced Species</subject><subject>Islands</subject><subject>long-distance dispersal</subject><subject>Microsatellite Repeats</subject><subject>microsatellites</subject><subject>Models, Genetic</subject><subject>Molecular Sequence Data</subject><subject>Peru</subject><subject>Phylogeography</subject><subject>Time Factors</subject><subject>Trees</subject><issn>0962-1083</issn><issn>1365-294X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><recordid>eNqNkc1u1DAUhS1ERYfCKyBLbMoiqX9iJ1mwoKN2AE2LhArTnWU7NyVDJp7aiZjhbXgWXgxnpsyiq3phXx1_5_paByFMSUrjOlumlEuRsDK7TRmhLCVCSJZunqHJ4eI5mpBSsoSSgh-jlyEsCaGcCfECHTMmSFnQfIIWX8FC12PrWtc1v3XfuA67Gvc_AM90-_fPWt-5gM12p_Qeogyurr0DjcO66VzQ-LO29yk-ncPdsNop8O4VOqp1G-D1w3mCvl1e3Ew_JvMvs0_TD_PEZrKIw4m414LIwnBiKalqIa1kvDLU0srI0nBeSmGgjuNCpimHSkJeGUZylhvBT9Dpvu_au_sBQq9WTbDQtroDNwRFCctKziVlT0FJIfJsh759hC7d4Lv4kUhRIYpMcBqpYk9Z70LwUKu1b1babyOkxpzUUo1xqDEONeakdjmpTbS-eXhgMCuoDsb_wUTg_R741bSwfXJjdXUxHavoT_b-JvSwOfi1_6lkznOhFtcz9f1qcTO9nV-qc_4P2hCu_Q</recordid><startdate>201206</startdate><enddate>201206</enddate><creator>CAETANO, S.</creator><creator>CURRAT, M.</creator><creator>PENNINGTON, R. T.</creator><creator>PRADO, D.</creator><creator>EXCOFFIER, L.</creator><creator>NACIRI, Y.</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201206</creationdate><title>Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)</title><author>CAETANO, S. ; CURRAT, M. ; PENNINGTON, R. T. ; PRADO, D. ; EXCOFFIER, L. ; NACIRI, Y.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>ABC analysis</topic><topic>Bayes Theorem</topic><topic>Bayesian analysis</topic><topic>Biogeography</topic><topic>chloroplast</topic><topic>Chloroplasts</topic><topic>Chloroplasts - genetics</topic><topic>Ecuador</topic><topic>Fabaceae - genetics</topic><topic>Founder Effect</topic><topic>founder events</topic><topic>Genetic diversity</topic><topic>genetic structure</topic><topic>Genetic Variation</topic><topic>Genetics</topic><topic>Haplotypes</topic><topic>Introduced Species</topic><topic>Islands</topic><topic>long-distance dispersal</topic><topic>Microsatellite Repeats</topic><topic>microsatellites</topic><topic>Models, Genetic</topic><topic>Molecular Sequence Data</topic><topic>Peru</topic><topic>Phylogeography</topic><topic>Time Factors</topic><topic>Trees</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>CAETANO, S.</creatorcontrib><creatorcontrib>CURRAT, M.</creatorcontrib><creatorcontrib>PENNINGTON, R. T.</creatorcontrib><creatorcontrib>PRADO, D.</creatorcontrib><creatorcontrib>EXCOFFIER, L.</creatorcontrib><creatorcontrib>NACIRI, Y.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>CAETANO, S.</au><au>CURRAT, M.</au><au>PENNINGTON, R. T.</au><au>PRADO, D.</au><au>EXCOFFIER, L.</au><au>NACIRI, Y.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)</atitle><jtitle>Molecular ecology</jtitle><addtitle>Mol Ecol</addtitle><date>2012-06</date><risdate>2012</risdate><volume>21</volume><issue>11</issue><spage>2743</spage><epage>2760</epage><pages>2743-2760</pages><issn>0962-1083</issn><eissn>1365-294X</eissn><abstract>This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloroplast spacers and six microsatellite loci, reveal significant differences between two mainland regions separated by the Andes mountains (Inter Andean vs. Pacific Coast) as well as a significant genetic differentiation of island populations. Microsatellites identify two distinct geographical clusters, the Galápagos and the mainland, and chloroplast markers show a private haplotype in the Galápagos. The nuclear distinctiveness of the Inter Andean populations suggests current restricted pollen flow, but chloroplast points to cross‐Andean dispersals via seeds, indicating that the Andes might not be an effective biogeographical barrier. The ABC analyses clearly point to the colonization of the Galápagos within the last 160 000 years and possibly as recently as 4750 years ago (475 generations). Founder events associated with colonization of the two islands where the species occurs are detected, with Española having been colonized after Floreana. We discuss two nonmutually exclusive possibilities for the colonization of the Galápagos, recent natural dispersal vs. human introduction.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>22509817</pmid><doi>10.1111/j.1365-294X.2012.05562.x</doi><tpages>18</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0962-1083
ispartof Molecular ecology, 2012-06, Vol.21 (11), p.2743-2760
issn 0962-1083
1365-294X
language eng
recordid cdi_proquest_miscellaneous_1024933612
source Wiley-Blackwell Read & Publish Collection
subjects ABC analysis
Bayes Theorem
Bayesian analysis
Biogeography
chloroplast
Chloroplasts
Chloroplasts - genetics
Ecuador
Fabaceae - genetics
Founder Effect
founder events
Genetic diversity
genetic structure
Genetic Variation
Genetics
Haplotypes
Introduced Species
Islands
long-distance dispersal
Microsatellite Repeats
microsatellites
Models, Genetic
Molecular Sequence Data
Peru
Phylogeography
Time Factors
Trees
title Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-04T07%3A46%3A25IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Recent%20colonization%20of%20the%20Gal%C3%A1pagos%20by%20the%20tree%20Geoffroea%20spinosa%20Jacq.%20(Leguminosae)&rft.jtitle=Molecular%20ecology&rft.au=CAETANO,%20S.&rft.date=2012-06&rft.volume=21&rft.issue=11&rft.spage=2743&rft.epage=2760&rft.pages=2743-2760&rft.issn=0962-1083&rft.eissn=1365-294X&rft_id=info:doi/10.1111/j.1365-294X.2012.05562.x&rft_dat=%3Cproquest_cross%3E2668273781%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1015584531&rft_id=info:pmid/22509817&rfr_iscdi=true