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Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)
This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloropla...
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Published in: | Molecular ecology 2012-06, Vol.21 (11), p.2743-2760 |
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description | This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloroplast spacers and six microsatellite loci, reveal significant differences between two mainland regions separated by the Andes mountains (Inter Andean vs. Pacific Coast) as well as a significant genetic differentiation of island populations. Microsatellites identify two distinct geographical clusters, the Galápagos and the mainland, and chloroplast markers show a private haplotype in the Galápagos. The nuclear distinctiveness of the Inter Andean populations suggests current restricted pollen flow, but chloroplast points to cross‐Andean dispersals via seeds, indicating that the Andes might not be an effective biogeographical barrier. The ABC analyses clearly point to the colonization of the Galápagos within the last 160 000 years and possibly as recently as 4750 years ago (475 generations). Founder events associated with colonization of the two islands where the species occurs are detected, with Española having been colonized after Floreana. We discuss two nonmutually exclusive possibilities for the colonization of the Galápagos, recent natural dispersal vs. human introduction. |
doi_str_mv | 10.1111/j.1365-294X.2012.05562.x |
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(Leguminosae)</title><source>Wiley-Blackwell Read & Publish Collection</source><creator>CAETANO, S. ; CURRAT, M. ; PENNINGTON, R. T. ; PRADO, D. ; EXCOFFIER, L. ; NACIRI, Y.</creator><creatorcontrib>CAETANO, S. ; CURRAT, M. ; PENNINGTON, R. T. ; PRADO, D. ; EXCOFFIER, L. ; NACIRI, Y.</creatorcontrib><description>This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloroplast spacers and six microsatellite loci, reveal significant differences between two mainland regions separated by the Andes mountains (Inter Andean vs. Pacific Coast) as well as a significant genetic differentiation of island populations. Microsatellites identify two distinct geographical clusters, the Galápagos and the mainland, and chloroplast markers show a private haplotype in the Galápagos. The nuclear distinctiveness of the Inter Andean populations suggests current restricted pollen flow, but chloroplast points to cross‐Andean dispersals via seeds, indicating that the Andes might not be an effective biogeographical barrier. The ABC analyses clearly point to the colonization of the Galápagos within the last 160 000 years and possibly as recently as 4750 years ago (475 generations). Founder events associated with colonization of the two islands where the species occurs are detected, with Española having been colonized after Floreana. We discuss two nonmutually exclusive possibilities for the colonization of the Galápagos, recent natural dispersal vs. human introduction.</description><identifier>ISSN: 0962-1083</identifier><identifier>EISSN: 1365-294X</identifier><identifier>DOI: 10.1111/j.1365-294X.2012.05562.x</identifier><identifier>PMID: 22509817</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>ABC analysis ; Bayes Theorem ; Bayesian analysis ; Biogeography ; chloroplast ; Chloroplasts ; Chloroplasts - genetics ; Ecuador ; Fabaceae - genetics ; Founder Effect ; founder events ; Genetic diversity ; genetic structure ; Genetic Variation ; Genetics ; Haplotypes ; Introduced Species ; Islands ; long-distance dispersal ; Microsatellite Repeats ; microsatellites ; Models, Genetic ; Molecular Sequence Data ; Peru ; Phylogeography ; Time Factors ; Trees</subject><ispartof>Molecular ecology, 2012-06, Vol.21 (11), p.2743-2760</ispartof><rights>2012 Blackwell Publishing Ltd</rights><rights>2012 Blackwell Publishing Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53</citedby><cites>FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22509817$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>CAETANO, S.</creatorcontrib><creatorcontrib>CURRAT, M.</creatorcontrib><creatorcontrib>PENNINGTON, R. T.</creatorcontrib><creatorcontrib>PRADO, D.</creatorcontrib><creatorcontrib>EXCOFFIER, L.</creatorcontrib><creatorcontrib>NACIRI, Y.</creatorcontrib><title>Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)</title><title>Molecular ecology</title><addtitle>Mol Ecol</addtitle><description>This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloroplast spacers and six microsatellite loci, reveal significant differences between two mainland regions separated by the Andes mountains (Inter Andean vs. Pacific Coast) as well as a significant genetic differentiation of island populations. Microsatellites identify two distinct geographical clusters, the Galápagos and the mainland, and chloroplast markers show a private haplotype in the Galápagos. The nuclear distinctiveness of the Inter Andean populations suggests current restricted pollen flow, but chloroplast points to cross‐Andean dispersals via seeds, indicating that the Andes might not be an effective biogeographical barrier. The ABC analyses clearly point to the colonization of the Galápagos within the last 160 000 years and possibly as recently as 4750 years ago (475 generations). Founder events associated with colonization of the two islands where the species occurs are detected, with Española having been colonized after Floreana. We discuss two nonmutually exclusive possibilities for the colonization of the Galápagos, recent natural dispersal vs. human introduction.</description><subject>ABC analysis</subject><subject>Bayes Theorem</subject><subject>Bayesian analysis</subject><subject>Biogeography</subject><subject>chloroplast</subject><subject>Chloroplasts</subject><subject>Chloroplasts - genetics</subject><subject>Ecuador</subject><subject>Fabaceae - genetics</subject><subject>Founder Effect</subject><subject>founder events</subject><subject>Genetic diversity</subject><subject>genetic structure</subject><subject>Genetic Variation</subject><subject>Genetics</subject><subject>Haplotypes</subject><subject>Introduced Species</subject><subject>Islands</subject><subject>long-distance dispersal</subject><subject>Microsatellite Repeats</subject><subject>microsatellites</subject><subject>Models, Genetic</subject><subject>Molecular Sequence Data</subject><subject>Peru</subject><subject>Phylogeography</subject><subject>Time Factors</subject><subject>Trees</subject><issn>0962-1083</issn><issn>1365-294X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><recordid>eNqNkc1u1DAUhS1ERYfCKyBLbMoiqX9iJ1mwoKN2AE2LhArTnWU7NyVDJp7aiZjhbXgWXgxnpsyiq3phXx1_5_paByFMSUrjOlumlEuRsDK7TRmhLCVCSJZunqHJ4eI5mpBSsoSSgh-jlyEsCaGcCfECHTMmSFnQfIIWX8FC12PrWtc1v3XfuA67Gvc_AM90-_fPWt-5gM12p_Qeogyurr0DjcO66VzQ-LO29yk-ncPdsNop8O4VOqp1G-D1w3mCvl1e3Ew_JvMvs0_TD_PEZrKIw4m414LIwnBiKalqIa1kvDLU0srI0nBeSmGgjuNCpimHSkJeGUZylhvBT9Dpvu_au_sBQq9WTbDQtroDNwRFCctKziVlT0FJIfJsh759hC7d4Lv4kUhRIYpMcBqpYk9Z70LwUKu1b1babyOkxpzUUo1xqDEONeakdjmpTbS-eXhgMCuoDsb_wUTg_R741bSwfXJjdXUxHavoT_b-JvSwOfi1_6lkznOhFtcz9f1qcTO9nV-qc_4P2hCu_Q</recordid><startdate>201206</startdate><enddate>201206</enddate><creator>CAETANO, S.</creator><creator>CURRAT, M.</creator><creator>PENNINGTON, R. T.</creator><creator>PRADO, D.</creator><creator>EXCOFFIER, L.</creator><creator>NACIRI, Y.</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201206</creationdate><title>Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)</title><author>CAETANO, S. ; CURRAT, M. ; PENNINGTON, R. T. ; PRADO, D. ; EXCOFFIER, L. ; NACIRI, Y.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4682-15682f5068b30c10df56c623db1c1db69b33965bef981e4a13ed6e7db20727b53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>ABC analysis</topic><topic>Bayes Theorem</topic><topic>Bayesian analysis</topic><topic>Biogeography</topic><topic>chloroplast</topic><topic>Chloroplasts</topic><topic>Chloroplasts - genetics</topic><topic>Ecuador</topic><topic>Fabaceae - genetics</topic><topic>Founder Effect</topic><topic>founder events</topic><topic>Genetic diversity</topic><topic>genetic structure</topic><topic>Genetic Variation</topic><topic>Genetics</topic><topic>Haplotypes</topic><topic>Introduced Species</topic><topic>Islands</topic><topic>long-distance dispersal</topic><topic>Microsatellite Repeats</topic><topic>microsatellites</topic><topic>Models, Genetic</topic><topic>Molecular Sequence Data</topic><topic>Peru</topic><topic>Phylogeography</topic><topic>Time Factors</topic><topic>Trees</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>CAETANO, S.</creatorcontrib><creatorcontrib>CURRAT, M.</creatorcontrib><creatorcontrib>PENNINGTON, R. 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T.</au><au>PRADO, D.</au><au>EXCOFFIER, L.</au><au>NACIRI, Y.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae)</atitle><jtitle>Molecular ecology</jtitle><addtitle>Mol Ecol</addtitle><date>2012-06</date><risdate>2012</risdate><volume>21</volume><issue>11</issue><spage>2743</spage><epage>2760</epage><pages>2743-2760</pages><issn>0962-1083</issn><eissn>1365-294X</eissn><abstract>This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloroplast spacers and six microsatellite loci, reveal significant differences between two mainland regions separated by the Andes mountains (Inter Andean vs. Pacific Coast) as well as a significant genetic differentiation of island populations. Microsatellites identify two distinct geographical clusters, the Galápagos and the mainland, and chloroplast markers show a private haplotype in the Galápagos. The nuclear distinctiveness of the Inter Andean populations suggests current restricted pollen flow, but chloroplast points to cross‐Andean dispersals via seeds, indicating that the Andes might not be an effective biogeographical barrier. The ABC analyses clearly point to the colonization of the Galápagos within the last 160 000 years and possibly as recently as 4750 years ago (475 generations). Founder events associated with colonization of the two islands where the species occurs are detected, with Española having been colonized after Floreana. We discuss two nonmutually exclusive possibilities for the colonization of the Galápagos, recent natural dispersal vs. human introduction.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>22509817</pmid><doi>10.1111/j.1365-294X.2012.05562.x</doi><tpages>18</tpages></addata></record> |
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subjects | ABC analysis Bayes Theorem Bayesian analysis Biogeography chloroplast Chloroplasts Chloroplasts - genetics Ecuador Fabaceae - genetics Founder Effect founder events Genetic diversity genetic structure Genetic Variation Genetics Haplotypes Introduced Species Islands long-distance dispersal Microsatellite Repeats microsatellites Models, Genetic Molecular Sequence Data Peru Phylogeography Time Factors Trees |
title | Recent colonization of the Galápagos by the tree Geoffroea spinosa Jacq. (Leguminosae) |
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