Phylogeny of bent-toed geckos (Cyrtodactylus) reveals a west to east pattern of diversification

• Published in: Molecular phylogenetics and evolution 2012-12, Vol.65 (3), p.992-1003
• Main Authors: Wood, Perry L., Heinicke, Matthew P., Jackman, Todd R., Bauer, Aaron M.
• Format: Article
• Language: English
• Subjects: Animals; Asia, Southeastern; Bayes Theorem; Biogeography; Cell Nucleus - genetics; Cyrtodactylus; data collection; Dispersal; DNA, Mitochondrial - genetics; Evolution, Molecular; Gekkonidae; Geography; Indonesia; Likelihood Functions; Lizards - classification; Lizards - genetics; loci; Models, Genetic; monophyly; Myanmar; Palaearctic region; Papuan region; Phylogeny; Sequence Analysis, DNA; Sundaland
• ISSN: 1055-7903; 1095-9513
• DOI: 10.1016/j.ympev.2012.08.025

[Display omitted] ▸ We estimate relationships and divergence times for the diverse Asian–Pacific gecko genus Cyrtodactylus. ▸ Cyrtodactylus is monophyletic only if the Indian genus Geckoella is also included. ▸ Divergences among major Cyrtodactylus lineages span nearly the entire Cenozoic. ▸ Biogeographic reconstructions depict a west-to-east pattern of colonization. ▸ Cyrtodactylus colonized Australia twice, via both New Guinea and the Lesser Sundas. The Asian/Pacific genus Cyrtodactylus is the most diverse and among the most widely distributed genera of geckos, and more species are continually being discovered. Major patterns in the evolutionary history of Cyrtodactylus have remained largely unknown because no published study has broadly sampled across the geographic range and morphological diversity of the genus. We assembled a data set including sequences from one mitochondrial and three nuclear loci for 68 Cyrtodactylus and 20 other gekkotan species to infer phylogenetic relationships within the genus and identify major biogeographic patterns. Our results indicate that Cyrtodactylus is monophyletic, but only if the Indian/Sri Lankan species sometimes recognized as Geckoella are included. Basal divergences divide Cyrtodactylus into three well-supported groups: the single species C. tibetanus, a clade of Myanmar/southern Himalayan species, and a large clade including all other Cyrtodactylus plus Geckoella. Within the largest major clade are several well-supported subclades, with separate subclades being most diverse in Thailand, Eastern Indochina, the Sunda region, the Papuan region, and the Philippines, respectively. The phylogenetic results, along with molecular clock and ancestral area analyses, show Cyrtodactylus to have originated in the circum-Himalayan region just after the Cretaceous/Paleogene boundary, with a generally west to east pattern of colonization and diversification progressing through the Cenozoic. Wallacean species are derived from within a Sundaland radiation, the Philippines were colonized from Borneo, and Australia was colonized twice, once via New Guinea and once via the Lesser Sundas. Overall, these results are consistent with past suggestions of a Palearctic origin for Cyrtodactylus, and highlight the key role of geography in diversification of the genus.