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Association of RASSF1A and p63 with Poor Recurrence-Free Survival in Node-Negative Stage I―II Non-Small Cell Lung Cancer
This study was aimed at analyzing the recurrence-related prognostic significance of 12 candidate molecular biomarkers in node-negative stage I-II non-small cell lung cancer (NSCLC). We retrospectively analyzed promoter methylation of eight genes using methylation-specific PCR in formalin-fixed and p...
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Published in: | Clinical cancer research 2013-03, Vol.19 (5), p.1204-1212 |
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description | This study was aimed at analyzing the recurrence-related prognostic significance of 12 candidate molecular biomarkers in node-negative stage I-II non-small cell lung cancer (NSCLC).
We retrospectively analyzed promoter methylation of eight genes using methylation-specific PCR in formalin-fixed and paraffin-embedded tissues from 328 node-negative stage I-II NSCLCs. The expression of Bcl-2, E-cadherin, p53, and p63 proteins was also assessed by immunohistochemistry.
Recurrence was found in 145 (44%) of 328 node-negative stage I-II NSCLCs with a median follow-up period of 6.2 years. No association was found between recurrence and alteration of individual biomarker in univariate analysis. We defined recurrently divergent groups on the basis of recursive partitioning analyses for 12 biomarkers and found a significant association of co-alteration of RASSF1A and p63 with poor recurrence-free survival (RFS). Cox proportional hazards analysis showed that hypermethylation of RASSF1A and negative expression of p63 was associated with poor RFS [HR, 1.93; 95% confidence interval (CI), 1.13-5.47; P = 0.009] compared with those without co-alteration of RASSF1A and p63, after adjusting for age, adjuvant therapy, histology, and tumor size. Random forest classifier including RASSF1A and p63 showed best performance in the prediction of recurrence in node-negative stage I-II NSCLCs: area under receiver operator characteristic curve for random forest was 0.91 and error rate for the model was 17%.
The present study suggests that RASSF1A and p63 may be independent prognostic indicators for RFS in node-negative stage I-II NSCLCs. |
doi_str_mv | 10.1158/1078-0432.CCR-12-2848 |
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We retrospectively analyzed promoter methylation of eight genes using methylation-specific PCR in formalin-fixed and paraffin-embedded tissues from 328 node-negative stage I-II NSCLCs. The expression of Bcl-2, E-cadherin, p53, and p63 proteins was also assessed by immunohistochemistry.
Recurrence was found in 145 (44%) of 328 node-negative stage I-II NSCLCs with a median follow-up period of 6.2 years. No association was found between recurrence and alteration of individual biomarker in univariate analysis. We defined recurrently divergent groups on the basis of recursive partitioning analyses for 12 biomarkers and found a significant association of co-alteration of RASSF1A and p63 with poor recurrence-free survival (RFS). Cox proportional hazards analysis showed that hypermethylation of RASSF1A and negative expression of p63 was associated with poor RFS [HR, 1.93; 95% confidence interval (CI), 1.13-5.47; P = 0.009] compared with those without co-alteration of RASSF1A and p63, after adjusting for age, adjuvant therapy, histology, and tumor size. Random forest classifier including RASSF1A and p63 showed best performance in the prediction of recurrence in node-negative stage I-II NSCLCs: area under receiver operator characteristic curve for random forest was 0.91 and error rate for the model was 17%.
The present study suggests that RASSF1A and p63 may be independent prognostic indicators for RFS in node-negative stage I-II NSCLCs.</description><identifier>ISSN: 1078-0432</identifier><identifier>EISSN: 1557-3265</identifier><identifier>DOI: 10.1158/1078-0432.CCR-12-2848</identifier><identifier>PMID: 23319821</identifier><identifier>CODEN: CCREF4</identifier><language>eng</language><publisher>Philadelphia, PA: American Association for Cancer Research</publisher><subject>Adenocarcinoma - genetics ; Adenocarcinoma - mortality ; Adenocarcinoma - pathology ; Adult ; Aged ; Aged, 80 and over ; Antineoplastic agents ; Biological and medical sciences ; Biomarkers, Tumor - genetics ; Carcinoma, Non-Small-Cell Lung - genetics ; Carcinoma, Non-Small-Cell Lung - mortality ; Carcinoma, Non-Small-Cell Lung - pathology ; Carcinoma, Squamous Cell - genetics ; Carcinoma, Squamous Cell - mortality ; Carcinoma, Squamous Cell - pathology ; DNA Methylation ; Female ; Follow-Up Studies ; Humans ; Lung Neoplasms - genetics ; Lung Neoplasms - mortality ; Lung Neoplasms - pathology ; Lymph Nodes - pathology ; Male ; Medical sciences ; Middle Aged ; Neoplasm Recurrence, Local - genetics ; Neoplasm Recurrence, Local - mortality ; Neoplasm Recurrence, Local - pathology ; Neoplasm Staging ; Pharmacology. Drug treatments ; Pneumology ; Prognosis ; Promoter Regions, Genetic - genetics ; Retrospective Studies ; Survival Rate ; Transcription Factors - genetics ; Tumor Suppressor Proteins - genetics ; Tumors of the respiratory system and mediastinum ; Young Adult</subject><ispartof>Clinical cancer research, 2013-03, Vol.19 (5), p.1204-1212</ispartof><rights>2014 INIST-CNRS</rights><rights>2012 AACR.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c386t-f854b3a78ec6bd71e20da8b024bd1b099759dfbfc9ed6b8b0eec07d5734e07943</citedby><cites>FETCH-LOGICAL-c386t-f854b3a78ec6bd71e20da8b024bd1b099759dfbfc9ed6b8b0eec07d5734e07943</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=27179783$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23319821$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>KO, Eunkyung</creatorcontrib><creatorcontrib>BO BIN LEE</creatorcontrib><creatorcontrib>KIM, Yujin</creatorcontrib><creatorcontrib>EUN JU LEE</creatorcontrib><creatorcontrib>EUN YOON CHO</creatorcontrib><creatorcontrib>JUNGHO HAN</creatorcontrib><creatorcontrib>YOUNG MOG SHIM</creatorcontrib><creatorcontrib>PARK, Joobae</creatorcontrib><creatorcontrib>KIM, Duk-Hwan</creatorcontrib><title>Association of RASSF1A and p63 with Poor Recurrence-Free Survival in Node-Negative Stage I―II Non-Small Cell Lung Cancer</title><title>Clinical cancer research</title><addtitle>Clin Cancer Res</addtitle><description>This study was aimed at analyzing the recurrence-related prognostic significance of 12 candidate molecular biomarkers in node-negative stage I-II non-small cell lung cancer (NSCLC).
We retrospectively analyzed promoter methylation of eight genes using methylation-specific PCR in formalin-fixed and paraffin-embedded tissues from 328 node-negative stage I-II NSCLCs. The expression of Bcl-2, E-cadherin, p53, and p63 proteins was also assessed by immunohistochemistry.
Recurrence was found in 145 (44%) of 328 node-negative stage I-II NSCLCs with a median follow-up period of 6.2 years. No association was found between recurrence and alteration of individual biomarker in univariate analysis. We defined recurrently divergent groups on the basis of recursive partitioning analyses for 12 biomarkers and found a significant association of co-alteration of RASSF1A and p63 with poor recurrence-free survival (RFS). Cox proportional hazards analysis showed that hypermethylation of RASSF1A and negative expression of p63 was associated with poor RFS [HR, 1.93; 95% confidence interval (CI), 1.13-5.47; P = 0.009] compared with those without co-alteration of RASSF1A and p63, after adjusting for age, adjuvant therapy, histology, and tumor size. Random forest classifier including RASSF1A and p63 showed best performance in the prediction of recurrence in node-negative stage I-II NSCLCs: area under receiver operator characteristic curve for random forest was 0.91 and error rate for the model was 17%.
The present study suggests that RASSF1A and p63 may be independent prognostic indicators for RFS in node-negative stage I-II NSCLCs.</description><subject>Adenocarcinoma - genetics</subject><subject>Adenocarcinoma - mortality</subject><subject>Adenocarcinoma - pathology</subject><subject>Adult</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Antineoplastic agents</subject><subject>Biological and medical sciences</subject><subject>Biomarkers, Tumor - genetics</subject><subject>Carcinoma, Non-Small-Cell Lung - genetics</subject><subject>Carcinoma, Non-Small-Cell Lung - mortality</subject><subject>Carcinoma, Non-Small-Cell Lung - pathology</subject><subject>Carcinoma, Squamous Cell - genetics</subject><subject>Carcinoma, Squamous Cell - mortality</subject><subject>Carcinoma, Squamous Cell - pathology</subject><subject>DNA Methylation</subject><subject>Female</subject><subject>Follow-Up Studies</subject><subject>Humans</subject><subject>Lung Neoplasms - genetics</subject><subject>Lung Neoplasms - mortality</subject><subject>Lung Neoplasms - pathology</subject><subject>Lymph Nodes - pathology</subject><subject>Male</subject><subject>Medical sciences</subject><subject>Middle Aged</subject><subject>Neoplasm Recurrence, Local - genetics</subject><subject>Neoplasm Recurrence, Local - mortality</subject><subject>Neoplasm Recurrence, Local - pathology</subject><subject>Neoplasm Staging</subject><subject>Pharmacology. Drug treatments</subject><subject>Pneumology</subject><subject>Prognosis</subject><subject>Promoter Regions, Genetic - genetics</subject><subject>Retrospective Studies</subject><subject>Survival Rate</subject><subject>Transcription Factors - genetics</subject><subject>Tumor Suppressor Proteins - genetics</subject><subject>Tumors of the respiratory system and mediastinum</subject><subject>Young Adult</subject><issn>1078-0432</issn><issn>1557-3265</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><recordid>eNpFkM1uEzEURi0EoqXwCCBvkNi4-HfsWUajpkSKCkpgbXnsO2HQZBzsmSBY9SV4QZ4ER01hY1v6zv2udRB6zeg1Y8q8Z1QbQqXg102zIYwTbqR5gi6ZUpoIXqmn5f3IXKAXOX-jlElG5XN0wYVgteHsEv1a5Bx976Y-jjh2eLPYbpdsgd0Y8KES-Ec_fcWfYkx4A35OCUYPZJkA8HZOx_7oBtyP-C4GIHewKzXHkkxuB3j15_73alWikWz3bhhwA-VYz-MON660pJfoWeeGDK_O9xX6srz53Hwg64-3q2axJl6YaiKdUbIVThvwVRs0A06DMy3lsg2spXWtVR26tvM1hKotAYCnOigtJFBdS3GF3j30HlL8PkOe7L7PvnzGjRDnbJlg0tRKaF5Q9YD6FHNO0NlD6vcu_bSM2pN2e1JqT0pt0W4ZtyftZe7NecXc7iH8m3r0XIC3Z8Bl74YuFQN9_s9ppmtthPgLZiqKsg</recordid><startdate>20130301</startdate><enddate>20130301</enddate><creator>KO, Eunkyung</creator><creator>BO BIN LEE</creator><creator>KIM, Yujin</creator><creator>EUN JU LEE</creator><creator>EUN YOON CHO</creator><creator>JUNGHO HAN</creator><creator>YOUNG MOG SHIM</creator><creator>PARK, Joobae</creator><creator>KIM, Duk-Hwan</creator><general>American Association for Cancer Research</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20130301</creationdate><title>Association of RASSF1A and p63 with Poor Recurrence-Free Survival in Node-Negative Stage I―II Non-Small Cell Lung Cancer</title><author>KO, Eunkyung ; BO BIN LEE ; KIM, Yujin ; EUN JU LEE ; EUN YOON CHO ; JUNGHO HAN ; YOUNG MOG SHIM ; PARK, Joobae ; KIM, Duk-Hwan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c386t-f854b3a78ec6bd71e20da8b024bd1b099759dfbfc9ed6b8b0eec07d5734e07943</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Adenocarcinoma - genetics</topic><topic>Adenocarcinoma - mortality</topic><topic>Adenocarcinoma - pathology</topic><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Antineoplastic agents</topic><topic>Biological and medical sciences</topic><topic>Biomarkers, Tumor - genetics</topic><topic>Carcinoma, Non-Small-Cell Lung - genetics</topic><topic>Carcinoma, Non-Small-Cell Lung - mortality</topic><topic>Carcinoma, Non-Small-Cell Lung - pathology</topic><topic>Carcinoma, Squamous Cell - genetics</topic><topic>Carcinoma, Squamous Cell - mortality</topic><topic>Carcinoma, Squamous Cell - pathology</topic><topic>DNA Methylation</topic><topic>Female</topic><topic>Follow-Up Studies</topic><topic>Humans</topic><topic>Lung Neoplasms - genetics</topic><topic>Lung Neoplasms - mortality</topic><topic>Lung Neoplasms - pathology</topic><topic>Lymph Nodes - pathology</topic><topic>Male</topic><topic>Medical sciences</topic><topic>Middle Aged</topic><topic>Neoplasm Recurrence, Local - genetics</topic><topic>Neoplasm Recurrence, Local - mortality</topic><topic>Neoplasm Recurrence, Local - pathology</topic><topic>Neoplasm Staging</topic><topic>Pharmacology. Drug treatments</topic><topic>Pneumology</topic><topic>Prognosis</topic><topic>Promoter Regions, Genetic - genetics</topic><topic>Retrospective Studies</topic><topic>Survival Rate</topic><topic>Transcription Factors - genetics</topic><topic>Tumor Suppressor Proteins - genetics</topic><topic>Tumors of the respiratory system and mediastinum</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>KO, Eunkyung</creatorcontrib><creatorcontrib>BO BIN LEE</creatorcontrib><creatorcontrib>KIM, Yujin</creatorcontrib><creatorcontrib>EUN JU LEE</creatorcontrib><creatorcontrib>EUN YOON CHO</creatorcontrib><creatorcontrib>JUNGHO HAN</creatorcontrib><creatorcontrib>YOUNG MOG SHIM</creatorcontrib><creatorcontrib>PARK, Joobae</creatorcontrib><creatorcontrib>KIM, Duk-Hwan</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Clinical cancer research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>KO, Eunkyung</au><au>BO BIN LEE</au><au>KIM, Yujin</au><au>EUN JU LEE</au><au>EUN YOON CHO</au><au>JUNGHO HAN</au><au>YOUNG MOG SHIM</au><au>PARK, Joobae</au><au>KIM, Duk-Hwan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Association of RASSF1A and p63 with Poor Recurrence-Free Survival in Node-Negative Stage I―II Non-Small Cell Lung Cancer</atitle><jtitle>Clinical cancer research</jtitle><addtitle>Clin Cancer Res</addtitle><date>2013-03-01</date><risdate>2013</risdate><volume>19</volume><issue>5</issue><spage>1204</spage><epage>1212</epage><pages>1204-1212</pages><issn>1078-0432</issn><eissn>1557-3265</eissn><coden>CCREF4</coden><abstract>This study was aimed at analyzing the recurrence-related prognostic significance of 12 candidate molecular biomarkers in node-negative stage I-II non-small cell lung cancer (NSCLC).
We retrospectively analyzed promoter methylation of eight genes using methylation-specific PCR in formalin-fixed and paraffin-embedded tissues from 328 node-negative stage I-II NSCLCs. The expression of Bcl-2, E-cadherin, p53, and p63 proteins was also assessed by immunohistochemistry.
Recurrence was found in 145 (44%) of 328 node-negative stage I-II NSCLCs with a median follow-up period of 6.2 years. No association was found between recurrence and alteration of individual biomarker in univariate analysis. We defined recurrently divergent groups on the basis of recursive partitioning analyses for 12 biomarkers and found a significant association of co-alteration of RASSF1A and p63 with poor recurrence-free survival (RFS). Cox proportional hazards analysis showed that hypermethylation of RASSF1A and negative expression of p63 was associated with poor RFS [HR, 1.93; 95% confidence interval (CI), 1.13-5.47; P = 0.009] compared with those without co-alteration of RASSF1A and p63, after adjusting for age, adjuvant therapy, histology, and tumor size. Random forest classifier including RASSF1A and p63 showed best performance in the prediction of recurrence in node-negative stage I-II NSCLCs: area under receiver operator characteristic curve for random forest was 0.91 and error rate for the model was 17%.
The present study suggests that RASSF1A and p63 may be independent prognostic indicators for RFS in node-negative stage I-II NSCLCs.</abstract><cop>Philadelphia, PA</cop><pub>American Association for Cancer Research</pub><pmid>23319821</pmid><doi>10.1158/1078-0432.CCR-12-2848</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adenocarcinoma - genetics Adenocarcinoma - mortality Adenocarcinoma - pathology Adult Aged Aged, 80 and over Antineoplastic agents Biological and medical sciences Biomarkers, Tumor - genetics Carcinoma, Non-Small-Cell Lung - genetics Carcinoma, Non-Small-Cell Lung - mortality Carcinoma, Non-Small-Cell Lung - pathology Carcinoma, Squamous Cell - genetics Carcinoma, Squamous Cell - mortality Carcinoma, Squamous Cell - pathology DNA Methylation Female Follow-Up Studies Humans Lung Neoplasms - genetics Lung Neoplasms - mortality Lung Neoplasms - pathology Lymph Nodes - pathology Male Medical sciences Middle Aged Neoplasm Recurrence, Local - genetics Neoplasm Recurrence, Local - mortality Neoplasm Recurrence, Local - pathology Neoplasm Staging Pharmacology. Drug treatments Pneumology Prognosis Promoter Regions, Genetic - genetics Retrospective Studies Survival Rate Transcription Factors - genetics Tumor Suppressor Proteins - genetics Tumors of the respiratory system and mediastinum Young Adult |
title | Association of RASSF1A and p63 with Poor Recurrence-Free Survival in Node-Negative Stage I―II Non-Small Cell Lung Cancer |
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