Survey of Compression of DNA Sequence

Compression of large collections of data can lead to improvements in retrieval times by offsetting the CPU decompression costs with the cost of seeking and retrieving data from disk. In this paper, the author has study the different compression method which can compress the large DNA sequence. In th...

Full description

Saved in:
Bibliographic Details
Published in:International journal of computer applications 2013-01, Vol.73 (6), p.52-58
Main Authors: Rai, Dhajvir Singh, Bharti, R K, Parihar, Bhawana
Format: Article
Language:English
Citations: Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:Compression of large collections of data can lead to improvements in retrieval times by offsetting the CPU decompression costs with the cost of seeking and retrieving data from disk. In this paper, the author has study the different compression method which can compress the large DNA sequence. In this paper, authors have explored the DNA compression method that is COMRAD, which is used to compare with the dictionary based compression method i. e. LZ77, LZ78, LZW and general purpose compression method RAY. In this, authors have analyzed which one algorithm is better to compress the large collection of the DNA Sequence. Compression table and the line graph show that which compression algorithm has a better compression ratio and the compression size. It also shows that which one has better compression and decompression time.
ISSN:0975-8887
0975-8887
DOI:10.5120/12749-9672