Genetic divergence among accessions of melon from traditional agriculture of the Brazilian Northeast

• Published in: Genetics and molecular research 2013-12, Vol.12 (4), p.6356-6371
• Main Authors: Aragão, F A S, Torres Filho, J, Nunes, G H S, Queiróz, M A, Bordallo, P N, Buso, G S C, Ferreira, M A, Costa, Z P, Bezerra Neto, F
• Format: Article
• Language: English
• Subjects: Agriculture; Brazil; Cucurbitaceae - classification; Cucurbitaceae - genetics; DNA, Plant - genetics; Fruit - anatomy & histology; Fruit - genetics; Genetic Drift; Genetic Markers; Genetic Speciation; Genetic Variation; Genotype; Microsatellite Repeats - genetics; Nucleic Acid Amplification Techniques; Phylogeny; Polymorphism, Genetic
• ISSN: 1676-5680; 1676-5680
• DOI: 10.4238/2013.December.6.3

The genetic divergence of 38 melon accessions from traditional agriculture of the Brazilian Northeast and three commercial hybrids were evaluated using fruit descriptors and microsatellite markers. The melon germplasm belongs to the botanic varieties cantalupensis (19), momordica (7), conomon (4), and inodorus (3), and to eight genotypes that were identified only at the species level. The fruit descriptors evaluated were: number of fruits per plant (NPF), fruit mass (FM; kg), fruit longitudinal diameter (LD; cm), fruit transversal diameter (TD; cm), shape index based on the LD/TD ratio, flesh pulp thickness, cavity thickness (CT; cm), firmness fruit pulp (N), and soluble solids (SS; °Brix). The results showed high variability for all descriptors, especially for NPF, LD, and FM. The grouping analysis based on fruit descriptors produced eight groups without taxonomic criteria. The LD (22.52%), NPF (19.70%), CT (16.13%), and SS (9.57%) characteristics were the descriptors that contributed the most to genotype dissimilarity. The 17 simple sequence repeat polymorphic markers amplified 41 alleles with an average of 2.41 alleles and three genotypes per locus. Some markers presented a high frequency for the main allele. The genetic diversity ranged from 0.07 to 0.60, the observed heterozygosity had very low values, and the mean polymorphism information content was 0.32. Molecular genetic similarity analyses clustered the accessions in 13 groups, also not following taxonomic ranks. There was no association between morphoagronomic and molecular groupings. In conclusion, there was great variability among the accessions and among and within botanic groups.