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Data-driven habitat analysis of the Ponto-Caspian amphipod Dikerogammarus villosus in two invaded regions in Europe
When forecasting invasions, models built on a dataset from a certain region often have to be used for simulations in another geographic region. Results on the reliability and usefulness of such models are missing in literature. The present study compares habitat suitability models for the invasive a...
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Published in: | Ecological informatics 2013-09, Vol.17, p.36-45 |
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description | When forecasting invasions, models built on a dataset from a certain region often have to be used for simulations in another geographic region. Results on the reliability and usefulness of such models are missing in literature. The present study compares habitat suitability models for the invasive amphipod species Dikerogammarus villosus developed based on data gathered in recently invaded rivers and channels in Flanders (Belgium), with similar models developed on the basis of long-term colonised systems in Croatia. The models were tested on their reliability in both regions. Two techniques, logistic regressions (LR) and classification trees (CT) were used to analyse the habitat preference of this species based on physical–chemical and morphological habitat characteristics. It was found that in Flanders, D. villosus prefers rivers with a non-natural bank structure, high oxygen saturation, low conductivity and good chemical water quality, which could be related to its distribution in large rivers and canals. In Croatian rivers, high oxygen saturation was the most important prerequisite for the species to be present. Despite the longer history of invasion in Croatia, the species seemed to have similar habitat preferences in both invaded regions. Both data-driven approaches yielded similar results, but CT performed somewhat better based on the used performance criteria (% Correctly Classified Instances, Kappa and Area Under Curve) and were easier to interpret compared to the LR. The CT models developed based on the data of Flanders performed moderately when applying on the data of Croatia, but had a lower performance when applied vice versa. The LR models did not perform well when applying on a dataset of another geographic area. Extrapolation of the logistic regression model seemed to be more difficult compared to classification tree models. Our results indicate that it is possible to determine the habitat preference of an invasive species and that these models could be applied to other regions in Europe in order to take preventive measures to control the further spread of invasive species. However, a major concern is that the models are developed based on a representative range of all relevant variables reflecting the stream conditions and that accurate data are important. |
doi_str_mv | 10.1016/j.ecoinf.2012.07.001 |
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Results on the reliability and usefulness of such models are missing in literature. The present study compares habitat suitability models for the invasive amphipod species Dikerogammarus villosus developed based on data gathered in recently invaded rivers and channels in Flanders (Belgium), with similar models developed on the basis of long-term colonised systems in Croatia. The models were tested on their reliability in both regions. Two techniques, logistic regressions (LR) and classification trees (CT) were used to analyse the habitat preference of this species based on physical–chemical and morphological habitat characteristics. It was found that in Flanders, D. villosus prefers rivers with a non-natural bank structure, high oxygen saturation, low conductivity and good chemical water quality, which could be related to its distribution in large rivers and canals. In Croatian rivers, high oxygen saturation was the most important prerequisite for the species to be present. Despite the longer history of invasion in Croatia, the species seemed to have similar habitat preferences in both invaded regions. Both data-driven approaches yielded similar results, but CT performed somewhat better based on the used performance criteria (% Correctly Classified Instances, Kappa and Area Under Curve) and were easier to interpret compared to the LR. The CT models developed based on the data of Flanders performed moderately when applying on the data of Croatia, but had a lower performance when applied vice versa. The LR models did not perform well when applying on a dataset of another geographic area. Extrapolation of the logistic regression model seemed to be more difficult compared to classification tree models. Our results indicate that it is possible to determine the habitat preference of an invasive species and that these models could be applied to other regions in Europe in order to take preventive measures to control the further spread of invasive species. However, a major concern is that the models are developed based on a representative range of all relevant variables reflecting the stream conditions and that accurate data are important.</description><identifier>ISSN: 1574-9541</identifier><identifier>DOI: 10.1016/j.ecoinf.2012.07.001</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>Alien species ; Animal, plant and microbial ecology ; Biological and medical sciences ; control methods ; Crustacea ; data collection ; Decision tree ; Dikerogammarus villosus ; Fundamental and applied biological sciences. Psychology ; General aspects. Techniques ; Habitat preference ; habitat preferences ; habitats ; invasive species ; Invertebrates ; Killer shrimp ; Logistic regression ; Methods and techniques (sampling, tagging, trapping, modelling...) ; oxygen ; regression analysis ; reliability ; rivers ; streams ; water quality</subject><ispartof>Ecological informatics, 2013-09, Vol.17, p.36-45</ispartof><rights>2012 Elsevier B.V.</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c393t-3e12bdd3c1a40e1f71d9f62f8cc3601905a80dde15a6f648c23577f7a99357f63</citedby><cites>FETCH-LOGICAL-c393t-3e12bdd3c1a40e1f71d9f62f8cc3601905a80dde15a6f648c23577f7a99357f63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>309,310,314,780,784,789,790,23929,23930,25139,27923,27924</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=27942891$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Boets, P.</creatorcontrib><creatorcontrib>Holguin, G.J.E.</creatorcontrib><creatorcontrib>Lock, K.</creatorcontrib><creatorcontrib>Goethals, P.L.M.</creatorcontrib><title>Data-driven habitat analysis of the Ponto-Caspian amphipod Dikerogammarus villosus in two invaded regions in Europe</title><title>Ecological informatics</title><description>When forecasting invasions, models built on a dataset from a certain region often have to be used for simulations in another geographic region. Results on the reliability and usefulness of such models are missing in literature. The present study compares habitat suitability models for the invasive amphipod species Dikerogammarus villosus developed based on data gathered in recently invaded rivers and channels in Flanders (Belgium), with similar models developed on the basis of long-term colonised systems in Croatia. The models were tested on their reliability in both regions. Two techniques, logistic regressions (LR) and classification trees (CT) were used to analyse the habitat preference of this species based on physical–chemical and morphological habitat characteristics. It was found that in Flanders, D. villosus prefers rivers with a non-natural bank structure, high oxygen saturation, low conductivity and good chemical water quality, which could be related to its distribution in large rivers and canals. In Croatian rivers, high oxygen saturation was the most important prerequisite for the species to be present. Despite the longer history of invasion in Croatia, the species seemed to have similar habitat preferences in both invaded regions. Both data-driven approaches yielded similar results, but CT performed somewhat better based on the used performance criteria (% Correctly Classified Instances, Kappa and Area Under Curve) and were easier to interpret compared to the LR. The CT models developed based on the data of Flanders performed moderately when applying on the data of Croatia, but had a lower performance when applied vice versa. The LR models did not perform well when applying on a dataset of another geographic area. Extrapolation of the logistic regression model seemed to be more difficult compared to classification tree models. Our results indicate that it is possible to determine the habitat preference of an invasive species and that these models could be applied to other regions in Europe in order to take preventive measures to control the further spread of invasive species. However, a major concern is that the models are developed based on a representative range of all relevant variables reflecting the stream conditions and that accurate data are important.</description><subject>Alien species</subject><subject>Animal, plant and microbial ecology</subject><subject>Biological and medical sciences</subject><subject>control methods</subject><subject>Crustacea</subject><subject>data collection</subject><subject>Decision tree</subject><subject>Dikerogammarus villosus</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General aspects. Techniques</subject><subject>Habitat preference</subject><subject>habitat preferences</subject><subject>habitats</subject><subject>invasive species</subject><subject>Invertebrates</subject><subject>Killer shrimp</subject><subject>Logistic regression</subject><subject>Methods and techniques (sampling, tagging, trapping, modelling...)</subject><subject>oxygen</subject><subject>regression analysis</subject><subject>reliability</subject><subject>rivers</subject><subject>streams</subject><subject>water quality</subject><issn>1574-9541</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><recordid>eNp9kEtv1DAQgHMAidLyD5DwBYlL0rGdxMkFCW3LQ6oEEvRsTe3xrpesHezsov57vKTiyGlGo29eX1W95tBw4P31viETfXCNAC4aUA0Af1Zd8E619di1_EX1Muc9QCuHQVxU-QYXrG3yJwpshw9-wYVhwOkx-8yiY8uO2LcYllhvMM8eA8PDvPNztOzG_6QUt3g4YDpmdvLTFHNJfGDL71jCCS1ZlmjrY_hbvj2mONNV9dzhlOnVU7ys7j_e_th8ru--fvqy-XBXGznKpZbExYO10nBsgbhT3I6uF24wRvbAR-hwAGuJd9i7vh2MkJ1STuE4lsT18rJ6t86dU_x1pLzog8-GpgkDxWPWvANQigtQBW1X1KSYcyKn5-TLW4-agz571Xu9etVnrxqULl5L29unDZgNTi5hMD7_6xVqbMUwnrk3K-cwatymwtx_L4PKATDIrhOFeL8SVIScPCWdjadgyPpEZtE2-v-f8ge9aZyD</recordid><startdate>20130901</startdate><enddate>20130901</enddate><creator>Boets, P.</creator><creator>Holguin, G.J.E.</creator><creator>Lock, K.</creator><creator>Goethals, P.L.M.</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>FBQ</scope><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QH</scope><scope>7SN</scope><scope>7UA</scope><scope>C1K</scope><scope>F1W</scope><scope>H97</scope><scope>L.G</scope></search><sort><creationdate>20130901</creationdate><title>Data-driven habitat analysis of the Ponto-Caspian amphipod Dikerogammarus villosus in two invaded regions in Europe</title><author>Boets, P. ; Holguin, G.J.E. ; Lock, K. ; Goethals, P.L.M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c393t-3e12bdd3c1a40e1f71d9f62f8cc3601905a80dde15a6f648c23577f7a99357f63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Alien species</topic><topic>Animal, plant and microbial ecology</topic><topic>Biological and medical sciences</topic><topic>control methods</topic><topic>Crustacea</topic><topic>data collection</topic><topic>Decision tree</topic><topic>Dikerogammarus villosus</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General aspects. Techniques</topic><topic>Habitat preference</topic><topic>habitat preferences</topic><topic>habitats</topic><topic>invasive species</topic><topic>Invertebrates</topic><topic>Killer shrimp</topic><topic>Logistic regression</topic><topic>Methods and techniques (sampling, tagging, trapping, modelling...)</topic><topic>oxygen</topic><topic>regression analysis</topic><topic>reliability</topic><topic>rivers</topic><topic>streams</topic><topic>water quality</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Boets, P.</creatorcontrib><creatorcontrib>Holguin, G.J.E.</creatorcontrib><creatorcontrib>Lock, K.</creatorcontrib><creatorcontrib>Goethals, P.L.M.</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Aqualine</collection><collection>Ecology Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>Ecological informatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Boets, P.</au><au>Holguin, G.J.E.</au><au>Lock, K.</au><au>Goethals, P.L.M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Data-driven habitat analysis of the Ponto-Caspian amphipod Dikerogammarus villosus in two invaded regions in Europe</atitle><jtitle>Ecological informatics</jtitle><date>2013-09-01</date><risdate>2013</risdate><volume>17</volume><spage>36</spage><epage>45</epage><pages>36-45</pages><issn>1574-9541</issn><abstract>When forecasting invasions, models built on a dataset from a certain region often have to be used for simulations in another geographic region. Results on the reliability and usefulness of such models are missing in literature. The present study compares habitat suitability models for the invasive amphipod species Dikerogammarus villosus developed based on data gathered in recently invaded rivers and channels in Flanders (Belgium), with similar models developed on the basis of long-term colonised systems in Croatia. The models were tested on their reliability in both regions. Two techniques, logistic regressions (LR) and classification trees (CT) were used to analyse the habitat preference of this species based on physical–chemical and morphological habitat characteristics. It was found that in Flanders, D. villosus prefers rivers with a non-natural bank structure, high oxygen saturation, low conductivity and good chemical water quality, which could be related to its distribution in large rivers and canals. In Croatian rivers, high oxygen saturation was the most important prerequisite for the species to be present. Despite the longer history of invasion in Croatia, the species seemed to have similar habitat preferences in both invaded regions. Both data-driven approaches yielded similar results, but CT performed somewhat better based on the used performance criteria (% Correctly Classified Instances, Kappa and Area Under Curve) and were easier to interpret compared to the LR. The CT models developed based on the data of Flanders performed moderately when applying on the data of Croatia, but had a lower performance when applied vice versa. The LR models did not perform well when applying on a dataset of another geographic area. Extrapolation of the logistic regression model seemed to be more difficult compared to classification tree models. Our results indicate that it is possible to determine the habitat preference of an invasive species and that these models could be applied to other regions in Europe in order to take preventive measures to control the further spread of invasive species. However, a major concern is that the models are developed based on a representative range of all relevant variables reflecting the stream conditions and that accurate data are important.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><doi>10.1016/j.ecoinf.2012.07.001</doi><tpages>10</tpages></addata></record> |
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subjects | Alien species Animal, plant and microbial ecology Biological and medical sciences control methods Crustacea data collection Decision tree Dikerogammarus villosus Fundamental and applied biological sciences. Psychology General aspects. Techniques Habitat preference habitat preferences habitats invasive species Invertebrates Killer shrimp Logistic regression Methods and techniques (sampling, tagging, trapping, modelling...) oxygen regression analysis reliability rivers streams water quality |
title | Data-driven habitat analysis of the Ponto-Caspian amphipod Dikerogammarus villosus in two invaded regions in Europe |
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