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Molecular cloning and biochemical characterization of medaka (Oryzias latipes) lysosomal neu4 sialidase
Glycoconjugates are known to be involved in many physiological events in vertebrates. Sialidase is one of the glycosidases, which removes sialic acid from glycoconjugates. In mammals, the properties and physiological functions of sialidases have been investigated, while there is little understanding...
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Published in: | Fish physiology and biochemistry 2014-10, Vol.40 (5), p.1461-1472 |
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description | Glycoconjugates are known to be involved in many physiological events in vertebrates. Sialidase is one of the glycosidases, which removes sialic acid from glycoconjugates. In mammals, the properties and physiological functions of sialidases have been investigated, while there is little understanding of fish sialidase. Here, to investigate the significance of fish neu4 sialidase, neu4 gene was cloned from medaka brain mRNA and identified. Sialidase-specific motifs (GPG, YRVP and Asp-Box) were well conserved in the medaka neu4 polypeptide. Optimal pH of medaka neu4 sialidase was 4.6, but its activity was sustained even at neutral and weak alkaline pH. The neu4 considerably cleaved sialic acid from 4-methylumbelliferyl-N-acetyl-α-D-neuraminic acid and sialyllactose, but not from ganglioside and fetuin, which are good substrates for human NEU4. neu4 activity was mostly detected in mitochondria/lysosome fraction after biochemical fractionation, and indirect immunofluorescence assays revealed neu4 localization in lysosome in neu4 overexpressed cells. Next, developmental change in medaka neu4 and other sialidase mRNA levels were estimated by real-time PCR. Each sialidases showed different expression patterns in embryonic development: neu4 was up-regulated at late developmental stage in embryo, and neu3a mRNA level was quite high in 0.5 dpf. On the other hand, neu3b expression was drastically increased after hatching, suggesting that each sialidase may play a different role in embryonic development. |
doi_str_mv | 10.1007/s10695-014-9940-9 |
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Sialidase is one of the glycosidases, which removes sialic acid from glycoconjugates. In mammals, the properties and physiological functions of sialidases have been investigated, while there is little understanding of fish sialidase. Here, to investigate the significance of fish neu4 sialidase, neu4 gene was cloned from medaka brain mRNA and identified. Sialidase-specific motifs (GPG, YRVP and Asp-Box) were well conserved in the medaka neu4 polypeptide. Optimal pH of medaka neu4 sialidase was 4.6, but its activity was sustained even at neutral and weak alkaline pH. The neu4 considerably cleaved sialic acid from 4-methylumbelliferyl-N-acetyl-α-D-neuraminic acid and sialyllactose, but not from ganglioside and fetuin, which are good substrates for human NEU4. neu4 activity was mostly detected in mitochondria/lysosome fraction after biochemical fractionation, and indirect immunofluorescence assays revealed neu4 localization in lysosome in neu4 overexpressed cells. Next, developmental change in medaka neu4 and other sialidase mRNA levels were estimated by real-time PCR. Each sialidases showed different expression patterns in embryonic development: neu4 was up-regulated at late developmental stage in embryo, and neu3a mRNA level was quite high in 0.5 dpf. On the other hand, neu3b expression was drastically increased after hatching, suggesting that each sialidase may play a different role in embryonic development.</description><identifier>ISSN: 0920-1742</identifier><identifier>EISSN: 1573-5168</identifier><identifier>DOI: 10.1007/s10695-014-9940-9</identifier><identifier>PMID: 24744226</identifier><language>eng</language><publisher>Dordrecht: Springer-Verlag</publisher><subject>Acids ; Amino Acid Motifs - genetics ; Animal Anatomy ; Animal Biochemistry ; Animal Physiology ; Animals ; Apoptosis ; Biomedical and Life Sciences ; brain ; Brain - metabolism ; Chemical Fractionation ; Cloning ; Cloning, Molecular ; Computational Biology ; Developmental stages ; DNA Primers - genetics ; embryogenesis ; Embryonic growth stage ; Embryos ; fetuins ; fish ; fluorescent antibody technique ; Fluorescent Antibody Technique, Indirect - veterinary ; Fractionation ; Freshwater ; Freshwater & Marine Ecology ; gangliosides ; gene expression ; gene expression regulation ; Gene Expression Regulation, Developmental - genetics ; Gene Expression Regulation, Developmental - physiology ; Gene Expression Regulation, Enzymologic - genetics ; Gene Expression Regulation, Enzymologic - physiology ; Genes ; Genomes ; glycoconjugates ; Hatching ; HEK293 Cells ; Histology ; Humans ; Hydrogen-Ion Concentration ; Life Sciences ; Localization ; lysosomes ; Lysosomes - enzymology ; messenger RNA ; mitochondria ; molecular cloning ; Morphology ; Neuraminidase - genetics ; Neuraminidase - metabolism ; Oryzias - genetics ; Oryzias - metabolism ; Oryzias latipes ; Physiology ; Polypeptides ; quantitative polymerase chain reaction ; Real-Time Polymerase Chain Reaction - veterinary ; RNA, Messenger - genetics ; RNA, Messenger - metabolism ; sialidase ; Substrate Specificity ; Vertebrates ; Zoology</subject><ispartof>Fish physiology and biochemistry, 2014-10, Vol.40 (5), p.1461-1472</ispartof><rights>Springer Science+Business Media Dordrecht 2014</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c528t-e6a346f6ad56fe87d9ea80f8a6af95297159de95d30992cbc1c052e222f5150f3</citedby><cites>FETCH-LOGICAL-c528t-e6a346f6ad56fe87d9ea80f8a6af95297159de95d30992cbc1c052e222f5150f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,27905,27906</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24744226$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shiozaki, Kazuhiro</creatorcontrib><creatorcontrib>Ryuzono, Sena</creatorcontrib><creatorcontrib>Matsushita, Naoto</creatorcontrib><creatorcontrib>Ikeda, Asami</creatorcontrib><creatorcontrib>Takeshita, Kazuki</creatorcontrib><creatorcontrib>Chigwechokha, Petros Kingstone</creatorcontrib><creatorcontrib>Komatsu, Masaharu</creatorcontrib><creatorcontrib>Miyagi, Taeko</creatorcontrib><title>Molecular cloning and biochemical characterization of medaka (Oryzias latipes) lysosomal neu4 sialidase</title><title>Fish physiology and biochemistry</title><addtitle>Fish Physiol Biochem</addtitle><addtitle>Fish Physiol Biochem</addtitle><description>Glycoconjugates are known to be involved in many physiological events in vertebrates. Sialidase is one of the glycosidases, which removes sialic acid from glycoconjugates. In mammals, the properties and physiological functions of sialidases have been investigated, while there is little understanding of fish sialidase. Here, to investigate the significance of fish neu4 sialidase, neu4 gene was cloned from medaka brain mRNA and identified. Sialidase-specific motifs (GPG, YRVP and Asp-Box) were well conserved in the medaka neu4 polypeptide. Optimal pH of medaka neu4 sialidase was 4.6, but its activity was sustained even at neutral and weak alkaline pH. The neu4 considerably cleaved sialic acid from 4-methylumbelliferyl-N-acetyl-α-D-neuraminic acid and sialyllactose, but not from ganglioside and fetuin, which are good substrates for human NEU4. neu4 activity was mostly detected in mitochondria/lysosome fraction after biochemical fractionation, and indirect immunofluorescence assays revealed neu4 localization in lysosome in neu4 overexpressed cells. Next, developmental change in medaka neu4 and other sialidase mRNA levels were estimated by real-time PCR. Each sialidases showed different expression patterns in embryonic development: neu4 was up-regulated at late developmental stage in embryo, and neu3a mRNA level was quite high in 0.5 dpf. On the other hand, neu3b expression was drastically increased after hatching, suggesting that each sialidase may play a different role in embryonic development.</description><subject>Acids</subject><subject>Amino Acid Motifs - genetics</subject><subject>Animal Anatomy</subject><subject>Animal Biochemistry</subject><subject>Animal Physiology</subject><subject>Animals</subject><subject>Apoptosis</subject><subject>Biomedical and Life Sciences</subject><subject>brain</subject><subject>Brain - metabolism</subject><subject>Chemical Fractionation</subject><subject>Cloning</subject><subject>Cloning, Molecular</subject><subject>Computational Biology</subject><subject>Developmental stages</subject><subject>DNA Primers - genetics</subject><subject>embryogenesis</subject><subject>Embryonic growth stage</subject><subject>Embryos</subject><subject>fetuins</subject><subject>fish</subject><subject>fluorescent antibody technique</subject><subject>Fluorescent Antibody Technique, Indirect - veterinary</subject><subject>Fractionation</subject><subject>Freshwater</subject><subject>Freshwater & Marine Ecology</subject><subject>gangliosides</subject><subject>gene expression</subject><subject>gene expression regulation</subject><subject>Gene Expression Regulation, Developmental - genetics</subject><subject>Gene Expression Regulation, Developmental - physiology</subject><subject>Gene Expression Regulation, Enzymologic - genetics</subject><subject>Gene Expression Regulation, Enzymologic - physiology</subject><subject>Genes</subject><subject>Genomes</subject><subject>glycoconjugates</subject><subject>Hatching</subject><subject>HEK293 Cells</subject><subject>Histology</subject><subject>Humans</subject><subject>Hydrogen-Ion Concentration</subject><subject>Life Sciences</subject><subject>Localization</subject><subject>lysosomes</subject><subject>Lysosomes - enzymology</subject><subject>messenger RNA</subject><subject>mitochondria</subject><subject>molecular cloning</subject><subject>Morphology</subject><subject>Neuraminidase - genetics</subject><subject>Neuraminidase - metabolism</subject><subject>Oryzias - genetics</subject><subject>Oryzias - metabolism</subject><subject>Oryzias latipes</subject><subject>Physiology</subject><subject>Polypeptides</subject><subject>quantitative polymerase chain reaction</subject><subject>Real-Time Polymerase Chain Reaction - 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genetics</topic><topic>Animal Anatomy</topic><topic>Animal Biochemistry</topic><topic>Animal Physiology</topic><topic>Animals</topic><topic>Apoptosis</topic><topic>Biomedical and Life Sciences</topic><topic>brain</topic><topic>Brain - metabolism</topic><topic>Chemical Fractionation</topic><topic>Cloning</topic><topic>Cloning, Molecular</topic><topic>Computational Biology</topic><topic>Developmental stages</topic><topic>DNA Primers - genetics</topic><topic>embryogenesis</topic><topic>Embryonic growth stage</topic><topic>Embryos</topic><topic>fetuins</topic><topic>fish</topic><topic>fluorescent antibody technique</topic><topic>Fluorescent Antibody Technique, Indirect - veterinary</topic><topic>Fractionation</topic><topic>Freshwater</topic><topic>Freshwater & Marine Ecology</topic><topic>gangliosides</topic><topic>gene expression</topic><topic>gene expression regulation</topic><topic>Gene Expression Regulation, Developmental - genetics</topic><topic>Gene Expression Regulation, Developmental - 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Academic</collection><jtitle>Fish physiology and biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shiozaki, Kazuhiro</au><au>Ryuzono, Sena</au><au>Matsushita, Naoto</au><au>Ikeda, Asami</au><au>Takeshita, Kazuki</au><au>Chigwechokha, Petros Kingstone</au><au>Komatsu, Masaharu</au><au>Miyagi, Taeko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular cloning and biochemical characterization of medaka (Oryzias latipes) lysosomal neu4 sialidase</atitle><jtitle>Fish physiology and biochemistry</jtitle><stitle>Fish Physiol Biochem</stitle><addtitle>Fish Physiol Biochem</addtitle><date>2014-10-01</date><risdate>2014</risdate><volume>40</volume><issue>5</issue><spage>1461</spage><epage>1472</epage><pages>1461-1472</pages><issn>0920-1742</issn><eissn>1573-5168</eissn><abstract>Glycoconjugates are known to be involved in many physiological events in vertebrates. Sialidase is one of the glycosidases, which removes sialic acid from glycoconjugates. In mammals, the properties and physiological functions of sialidases have been investigated, while there is little understanding of fish sialidase. Here, to investigate the significance of fish neu4 sialidase, neu4 gene was cloned from medaka brain mRNA and identified. Sialidase-specific motifs (GPG, YRVP and Asp-Box) were well conserved in the medaka neu4 polypeptide. Optimal pH of medaka neu4 sialidase was 4.6, but its activity was sustained even at neutral and weak alkaline pH. The neu4 considerably cleaved sialic acid from 4-methylumbelliferyl-N-acetyl-α-D-neuraminic acid and sialyllactose, but not from ganglioside and fetuin, which are good substrates for human NEU4. neu4 activity was mostly detected in mitochondria/lysosome fraction after biochemical fractionation, and indirect immunofluorescence assays revealed neu4 localization in lysosome in neu4 overexpressed cells. Next, developmental change in medaka neu4 and other sialidase mRNA levels were estimated by real-time PCR. Each sialidases showed different expression patterns in embryonic development: neu4 was up-regulated at late developmental stage in embryo, and neu3a mRNA level was quite high in 0.5 dpf. On the other hand, neu3b expression was drastically increased after hatching, suggesting that each sialidase may play a different role in embryonic development.</abstract><cop>Dordrecht</cop><pub>Springer-Verlag</pub><pmid>24744226</pmid><doi>10.1007/s10695-014-9940-9</doi><tpages>12</tpages></addata></record> |
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subjects | Acids Amino Acid Motifs - genetics Animal Anatomy Animal Biochemistry Animal Physiology Animals Apoptosis Biomedical and Life Sciences brain Brain - metabolism Chemical Fractionation Cloning Cloning, Molecular Computational Biology Developmental stages DNA Primers - genetics embryogenesis Embryonic growth stage Embryos fetuins fish fluorescent antibody technique Fluorescent Antibody Technique, Indirect - veterinary Fractionation Freshwater Freshwater & Marine Ecology gangliosides gene expression gene expression regulation Gene Expression Regulation, Developmental - genetics Gene Expression Regulation, Developmental - physiology Gene Expression Regulation, Enzymologic - genetics Gene Expression Regulation, Enzymologic - physiology Genes Genomes glycoconjugates Hatching HEK293 Cells Histology Humans Hydrogen-Ion Concentration Life Sciences Localization lysosomes Lysosomes - enzymology messenger RNA mitochondria molecular cloning Morphology Neuraminidase - genetics Neuraminidase - metabolism Oryzias - genetics Oryzias - metabolism Oryzias latipes Physiology Polypeptides quantitative polymerase chain reaction Real-Time Polymerase Chain Reaction - veterinary RNA, Messenger - genetics RNA, Messenger - metabolism sialidase Substrate Specificity Vertebrates Zoology |
title | Molecular cloning and biochemical characterization of medaka (Oryzias latipes) lysosomal neu4 sialidase |
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