Improved PCR assay for the specific detection and quantitation of Escherichia coli serotype O157 in water

• Published in: Applied microbiology and biotechnology 2014-09, Vol.98 (18), p.7869-7877
• Main Authors: Cho, Min Seok, Joh, Kiseong, Ahn, Tae-Young, Park, Dong Suk
• Format: Article
• Language: English
• Subjects: Antigens; Applied Genetics and Molecular Biotechnology; Bacteria; Bacteriological Techniques - methods; Bioinformatics; Biological assay; Biomedical and Life Sciences; Biotechnology; DNA; E coli; Escherichia coli; Escherichia coli - genetics; Escherichia coli - isolation & purification; Escherichia coli O157; Genes; Genetic aspects; Genomes; genomics; Global health; health services; Identification; Identification and classification; Life Sciences; Microbial Genetics and Genomics; Microbiology; Microorganisms; monitoring; nucleotide sequences; Pathogens; Polymerase Chain Reaction; Proteins; Salmonella; sequence analysis; Serology; serotypes; Studies; Toxins; Water analysis; Water Microbiology; Water sampling; Water supply
• ISSN: 0175-7598; 1432-0614
• DOI: 10.1007/s00253-014-5855-8

Escherichia coli serotype O157 is still a major global healthcare problem. However, only limited information is now available on the molecular and serological detection of pathogenic bacteria. Therefore, the development of appropriate strategies for their rapid identification and monitoring is still needed. In general, the sequence analysis based on stx, slt, eae, hlyA, rfb, and fliC ₕ₇ genes is widely employed for the identification of E. coli serotype O157; but there have been critical defects in the diagnosis and identification of E. coli serotype O157, in that they are also present in other E. coli serogroups. In this study, NCBI-BLAST searches using the nucleotide sequences of the putative regulatory protein gene from E. coli O157:H7 str. Sakai found sequence difference at the serotype level. The specific primers from the putative regulatory protein gene were designed and investigated for their sensitivity and specificity for detecting the pathogen in environment water samples. The specificity of the primer set was evaluated using genomic DNA from 8 isolates of E. coli serotype O157 and 32 other reference strains. In addition, the sensitivity and specificity of this assay were confirmed by successful identification of E. coli serotype O157 in environmental water samples. In conclusion, this study showed that the newly developed quantitative serotype-specific PCR method is a highly specific and efficient tool for the surveillance and rapid detection of high-risk E. coli serotype O157.