Genetic structure and biological properties of the first ancient multiresistance plasmid pKLH80 isolated from a permafrost bacterium

• Published in: Microbiology (Society for General Microbiology) 2014-10, Vol.160 (Pt 10), p.2253-2263
• Main Authors: Petrova, Mayya, Kurakov, Anton, Shcherbatova, Natalya, Mindlin, Sofia
• Format: Article
• Language: English
• Subjects: Base Composition; DNA Replication; DNA, Bacterial - chemistry; DNA, Bacterial - genetics; Drug Resistance, Multiple, Bacterial; Gene Order; Interspersed Repetitive Sequences; Molecular Sequence Data; Open Reading Frames; Permafrost - microbiology; Plasmids; Psychrobacter - genetics; Psychrobacter - isolation & purification; Sequence Analysis, DNA; Sequence Homology
• ISSN: 1350-0872; 1465-2080
• DOI: 10.1099/mic.0.079335-0

A novel multidrug-resistance plasmid, pKLH80, previously isolated from Psychrobacter maritimus MR29-12 found in ancient permafrost, was completely sequenced and analysed. In our previous studies, we focused on the pKLH80 plasmid region containing streptomycin and tetracycline resistance genes, and their mobilization with an upstream-located ISPpy1 insertion sequence (IS) element. Here, we present the complete sequence of pKLH80 and analysis of its backbone genetic structure, including previously unknown features of the plasmid's accessory region, notably a novel variant of the β-lactamase gene blaRTG-6. Plasmid pKLH80 was found to be a circular 14 835 bp molecule that has an overall G+C content of 40.3 mol% and encodes 20 putative ORFs. There are two distinctive functional modules within the plasmid backbone sequence: (i) the replication module consisting of repB and the oriV region; and (ii) the mobilization module consisting of mobA, mobC and oriT. All of the aforementioned genes share sequence identities with corresponding genes of different species of Psychrobacter. The plasmid accessory region contains antibiotic resistance genes and IS elements (ISPsma1 of the IS982 family, and ISPpy1 and ISAba14 of the IS3 family) found in environmental and clinical bacterial strains of different taxa. We revealed that the sequences flanking blaRTG-6 and closely related genes from clinical bacteria are nearly identical. This fact suggests that blaRTG-6 from the environmental strain of Psychrobacter is a progenitor of blaRTG genes of clinical bacteria. We also showed that pKLH80 can replicate in different strains of Acinetobacter and Psychrobacter genera. The roles of IS elements in the horizontal transfer of antibiotic resistance genes are examined and discussed.