Loading…

Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts

We present a graph-based framework for airway tree reconstruction from computerized tomography (CT) scans and evaluate the performance of different feature categories and their combinations on five lung cohorts. The approach consists of two main processing steps. First, potential airway branch and c...

Full description

Saved in:
Bibliographic Details
Published in:IEEE transactions on medical imaging 2015-05, Vol.34 (5), p.1063-1076
Main Authors: Bauer, Christian, Eberlein, Michael, Beichel, Reinhard R.
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c491t-584146b5e1d426a569712c75cadbb6f059660f1c4c0412ef3ea49f55bd0e92c03
cites cdi_FETCH-LOGICAL-c491t-584146b5e1d426a569712c75cadbb6f059660f1c4c0412ef3ea49f55bd0e92c03
container_end_page 1076
container_issue 5
container_start_page 1063
container_title IEEE transactions on medical imaging
container_volume 34
creator Bauer, Christian
Eberlein, Michael
Beichel, Reinhard R.
description We present a graph-based framework for airway tree reconstruction from computerized tomography (CT) scans and evaluate the performance of different feature categories and their combinations on five lung cohorts. The approach consists of two main processing steps. First, potential airway branch and connection candidates are identified and represented by a graph structure with weighted nodes and edges, respectively. Second, an optimization algorithm is utilized for generating an airway detection result by selecting a subset of airway branches and connections based on graph weights derived from image features. The performance of the algorithm with different feature categories and their combinations was assessed on a set of 50 lung CT scans from five different cohorts, including normal and diseased lungs. Results show trade-offs between feature categories/combinations in terms of correctly (true positive) and incorrectly (false positive) identified airways. Also, the performance of features in dependence of lung cohort was analyzed. Across all cohorts, a good trade-off with high true positive rate (TPR) and low false positive rate (FPR) was achieved by a combination of gray-value, local shape, and structural features. This combination enabled extracting 91.80% of reference airways (TPR) in combination with a low FPR of 1.00%. In addition, this variant was evaluated on the public EXACT'09 test set, and a comparison with other airway detection approaches is provided. One of the main advantages of the presented method is that it is robust against local disturbances/artifacts or other ambiguities that are frequently occurring in lung CT scans.
doi_str_mv 10.1109/TMI.2014.2374615
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_proquest_miscellaneous_1678573144</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><ieee_id>6966795</ieee_id><sourcerecordid>3703448991</sourcerecordid><originalsourceid>FETCH-LOGICAL-c491t-584146b5e1d426a569712c75cadbb6f059660f1c4c0412ef3ea49f55bd0e92c03</originalsourceid><addsrcrecordid>eNpdkcFrFDEYxYNY7Fq9C4IEvHiZNckkmYmHQh27baEi6AreQibzxU2ZnazJzEr_e7PddbGecni_9_heHkKvKJlTStT75eebOSOUz1lZcUnFEzSjQtQFE_zHUzQjrKoLQiQ7Rc9TuiOZFEQ9Q6dZL-uSiBnqr6LZrIqPJkGHL3z8be7xMgLgr2DDkMY42dGHAS9iWONmBWnEzRJ_s2ZIH_Dl1vSTedCDw5-8cxBhGPECzDhFSHhn9FvATViFOKYX6MSZPsHLw3uGvi8ul811cfvl6qa5uC0sV3QsRM0pl60A2nEmjZCqosxWwpqubaUjQklJHLXcEk4ZuBIMV06ItiOgmCXlGTrf526mdg2dzTdF0-tN9GsT73UwXj9WBr_SP8NWc04rzkQOeHcIiOHXlEvrtU8W-t4MEKakqaxqUZWU84y-_Q-9C1Mccr1M1YIpoqoyU2RP2RhSiuCOx1Cid1PqPKXeTakPU2bLm39LHA1_t8vA6z3gAeAoy_w5lRLlH4Mropo</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1685290973</pqid></control><display><type>article</type><title>Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts</title><source>IEEE Electronic Library (IEL) Journals</source><creator>Bauer, Christian ; Eberlein, Michael ; Beichel, Reinhard R.</creator><creatorcontrib>Bauer, Christian ; Eberlein, Michael ; Beichel, Reinhard R.</creatorcontrib><description>We present a graph-based framework for airway tree reconstruction from computerized tomography (CT) scans and evaluate the performance of different feature categories and their combinations on five lung cohorts. The approach consists of two main processing steps. First, potential airway branch and connection candidates are identified and represented by a graph structure with weighted nodes and edges, respectively. Second, an optimization algorithm is utilized for generating an airway detection result by selecting a subset of airway branches and connections based on graph weights derived from image features. The performance of the algorithm with different feature categories and their combinations was assessed on a set of 50 lung CT scans from five different cohorts, including normal and diseased lungs. Results show trade-offs between feature categories/combinations in terms of correctly (true positive) and incorrectly (false positive) identified airways. Also, the performance of features in dependence of lung cohort was analyzed. Across all cohorts, a good trade-off with high true positive rate (TPR) and low false positive rate (FPR) was achieved by a combination of gray-value, local shape, and structural features. This combination enabled extracting 91.80% of reference airways (TPR) in combination with a low FPR of 1.00%. In addition, this variant was evaluated on the public EXACT'09 test set, and a comparison with other airway detection approaches is provided. One of the main advantages of the presented method is that it is robust against local disturbances/artifacts or other ambiguities that are frequently occurring in lung CT scans.</description><identifier>ISSN: 0278-0062</identifier><identifier>EISSN: 1558-254X</identifier><identifier>DOI: 10.1109/TMI.2014.2374615</identifier><identifier>PMID: 25438305</identifier><identifier>CODEN: ITMID4</identifier><language>eng</language><publisher>United States: IEEE</publisher><subject>Airway detection ; Cavity resonators ; Computed tomography ; Diseases ; graph-based optimization ; Humans ; Image reconstruction ; Image segmentation ; Lung - diagnostic imaging ; Lung Diseases - diagnostic imaging ; Lungs ; Medical imaging ; Optimization ; Radiographic Image Enhancement - methods ; Radiography, Thoracic - methods ; Tomography, X-Ray Computed - methods ; X-ray computed tomography</subject><ispartof>IEEE transactions on medical imaging, 2015-05, Vol.34 (5), p.1063-1076</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. (IEEE) May 2015</rights><rights>Copyright (c) 2014 IEEE. 2014</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c491t-584146b5e1d426a569712c75cadbb6f059660f1c4c0412ef3ea49f55bd0e92c03</citedby><cites>FETCH-LOGICAL-c491t-584146b5e1d426a569712c75cadbb6f059660f1c4c0412ef3ea49f55bd0e92c03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://ieeexplore.ieee.org/document/6966795$$EHTML$$P50$$Gieee$$H</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,54796</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25438305$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bauer, Christian</creatorcontrib><creatorcontrib>Eberlein, Michael</creatorcontrib><creatorcontrib>Beichel, Reinhard R.</creatorcontrib><title>Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts</title><title>IEEE transactions on medical imaging</title><addtitle>TMI</addtitle><addtitle>IEEE Trans Med Imaging</addtitle><description>We present a graph-based framework for airway tree reconstruction from computerized tomography (CT) scans and evaluate the performance of different feature categories and their combinations on five lung cohorts. The approach consists of two main processing steps. First, potential airway branch and connection candidates are identified and represented by a graph structure with weighted nodes and edges, respectively. Second, an optimization algorithm is utilized for generating an airway detection result by selecting a subset of airway branches and connections based on graph weights derived from image features. The performance of the algorithm with different feature categories and their combinations was assessed on a set of 50 lung CT scans from five different cohorts, including normal and diseased lungs. Results show trade-offs between feature categories/combinations in terms of correctly (true positive) and incorrectly (false positive) identified airways. Also, the performance of features in dependence of lung cohort was analyzed. Across all cohorts, a good trade-off with high true positive rate (TPR) and low false positive rate (FPR) was achieved by a combination of gray-value, local shape, and structural features. This combination enabled extracting 91.80% of reference airways (TPR) in combination with a low FPR of 1.00%. In addition, this variant was evaluated on the public EXACT'09 test set, and a comparison with other airway detection approaches is provided. One of the main advantages of the presented method is that it is robust against local disturbances/artifacts or other ambiguities that are frequently occurring in lung CT scans.</description><subject>Airway detection</subject><subject>Cavity resonators</subject><subject>Computed tomography</subject><subject>Diseases</subject><subject>graph-based optimization</subject><subject>Humans</subject><subject>Image reconstruction</subject><subject>Image segmentation</subject><subject>Lung - diagnostic imaging</subject><subject>Lung Diseases - diagnostic imaging</subject><subject>Lungs</subject><subject>Medical imaging</subject><subject>Optimization</subject><subject>Radiographic Image Enhancement - methods</subject><subject>Radiography, Thoracic - methods</subject><subject>Tomography, X-Ray Computed - methods</subject><subject>X-ray computed tomography</subject><issn>0278-0062</issn><issn>1558-254X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNpdkcFrFDEYxYNY7Fq9C4IEvHiZNckkmYmHQh27baEi6AreQibzxU2ZnazJzEr_e7PddbGecni_9_heHkKvKJlTStT75eebOSOUz1lZcUnFEzSjQtQFE_zHUzQjrKoLQiQ7Rc9TuiOZFEQ9Q6dZL-uSiBnqr6LZrIqPJkGHL3z8be7xMgLgr2DDkMY42dGHAS9iWONmBWnEzRJ_s2ZIH_Dl1vSTedCDw5-8cxBhGPECzDhFSHhn9FvATViFOKYX6MSZPsHLw3uGvi8ul811cfvl6qa5uC0sV3QsRM0pl60A2nEmjZCqosxWwpqubaUjQklJHLXcEk4ZuBIMV06ItiOgmCXlGTrf526mdg2dzTdF0-tN9GsT73UwXj9WBr_SP8NWc04rzkQOeHcIiOHXlEvrtU8W-t4MEKakqaxqUZWU84y-_Q-9C1Mccr1M1YIpoqoyU2RP2RhSiuCOx1Cid1PqPKXeTakPU2bLm39LHA1_t8vA6z3gAeAoy_w5lRLlH4Mropo</recordid><startdate>20150501</startdate><enddate>20150501</enddate><creator>Bauer, Christian</creator><creator>Eberlein, Michael</creator><creator>Beichel, Reinhard R.</creator><general>IEEE</general><general>The Institute of Electrical and Electronics Engineers, Inc. (IEEE)</general><scope>97E</scope><scope>RIA</scope><scope>RIE</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>NAPCQ</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20150501</creationdate><title>Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts</title><author>Bauer, Christian ; Eberlein, Michael ; Beichel, Reinhard R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c491t-584146b5e1d426a569712c75cadbb6f059660f1c4c0412ef3ea49f55bd0e92c03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Airway detection</topic><topic>Cavity resonators</topic><topic>Computed tomography</topic><topic>Diseases</topic><topic>graph-based optimization</topic><topic>Humans</topic><topic>Image reconstruction</topic><topic>Image segmentation</topic><topic>Lung - diagnostic imaging</topic><topic>Lung Diseases - diagnostic imaging</topic><topic>Lungs</topic><topic>Medical imaging</topic><topic>Optimization</topic><topic>Radiographic Image Enhancement - methods</topic><topic>Radiography, Thoracic - methods</topic><topic>Tomography, X-Ray Computed - methods</topic><topic>X-ray computed tomography</topic><toplevel>online_resources</toplevel><creatorcontrib>Bauer, Christian</creatorcontrib><creatorcontrib>Eberlein, Michael</creatorcontrib><creatorcontrib>Beichel, Reinhard R.</creatorcontrib><collection>IEEE All-Society Periodicals Package (ASPP) 2005-present</collection><collection>IEEE All-Society Periodicals Package (ASPP) 1998-Present</collection><collection>IEEE Explore</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics &amp; Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical &amp; Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology &amp; Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts – Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Nursing &amp; Allied Health Premium</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>IEEE transactions on medical imaging</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bauer, Christian</au><au>Eberlein, Michael</au><au>Beichel, Reinhard R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts</atitle><jtitle>IEEE transactions on medical imaging</jtitle><stitle>TMI</stitle><addtitle>IEEE Trans Med Imaging</addtitle><date>2015-05-01</date><risdate>2015</risdate><volume>34</volume><issue>5</issue><spage>1063</spage><epage>1076</epage><pages>1063-1076</pages><issn>0278-0062</issn><eissn>1558-254X</eissn><coden>ITMID4</coden><abstract>We present a graph-based framework for airway tree reconstruction from computerized tomography (CT) scans and evaluate the performance of different feature categories and their combinations on five lung cohorts. The approach consists of two main processing steps. First, potential airway branch and connection candidates are identified and represented by a graph structure with weighted nodes and edges, respectively. Second, an optimization algorithm is utilized for generating an airway detection result by selecting a subset of airway branches and connections based on graph weights derived from image features. The performance of the algorithm with different feature categories and their combinations was assessed on a set of 50 lung CT scans from five different cohorts, including normal and diseased lungs. Results show trade-offs between feature categories/combinations in terms of correctly (true positive) and incorrectly (false positive) identified airways. Also, the performance of features in dependence of lung cohort was analyzed. Across all cohorts, a good trade-off with high true positive rate (TPR) and low false positive rate (FPR) was achieved by a combination of gray-value, local shape, and structural features. This combination enabled extracting 91.80% of reference airways (TPR) in combination with a low FPR of 1.00%. In addition, this variant was evaluated on the public EXACT'09 test set, and a comparison with other airway detection approaches is provided. One of the main advantages of the presented method is that it is robust against local disturbances/artifacts or other ambiguities that are frequently occurring in lung CT scans.</abstract><cop>United States</cop><pub>IEEE</pub><pmid>25438305</pmid><doi>10.1109/TMI.2014.2374615</doi><tpages>14</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0278-0062
ispartof IEEE transactions on medical imaging, 2015-05, Vol.34 (5), p.1063-1076
issn 0278-0062
1558-254X
language eng
recordid cdi_proquest_miscellaneous_1678573144
source IEEE Electronic Library (IEL) Journals
subjects Airway detection
Cavity resonators
Computed tomography
Diseases
graph-based optimization
Humans
Image reconstruction
Image segmentation
Lung - diagnostic imaging
Lung Diseases - diagnostic imaging
Lungs
Medical imaging
Optimization
Radiographic Image Enhancement - methods
Radiography, Thoracic - methods
Tomography, X-Ray Computed - methods
X-ray computed tomography
title Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-05T08%3A28%3A14IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Graph-Based%20Airway%20Tree%20Reconstruction%20From%20Chest%20CT%20Scans:%20Evaluation%20of%20Different%20Features%20on%20Five%20Cohorts&rft.jtitle=IEEE%20transactions%20on%20medical%20imaging&rft.au=Bauer,%20Christian&rft.date=2015-05-01&rft.volume=34&rft.issue=5&rft.spage=1063&rft.epage=1076&rft.pages=1063-1076&rft.issn=0278-0062&rft.eissn=1558-254X&rft.coden=ITMID4&rft_id=info:doi/10.1109/TMI.2014.2374615&rft_dat=%3Cproquest_pubme%3E3703448991%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c491t-584146b5e1d426a569712c75cadbb6f059660f1c4c0412ef3ea49f55bd0e92c03%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1685290973&rft_id=info:pmid/25438305&rft_ieee_id=6966795&rfr_iscdi=true