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Site promiscuity of coliphage HK022 integrase as a tool for gene therapy
The integrase (Int) encoded by the lambdoid coliphage HK022 targets in its host chromosome a 21 base pair (bp) recombination site termed attB or BOB'. attB comprises two 7 bp partially inverted (palindromic) Int-binding sites of 7 bp each termed B and B'. B and B' flank a central 7 bp...
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Published in: | Gene therapy 2015-07, Vol.22 (7), p.521-527 |
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Main Authors: | , , , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites Items that cite this one |
Online Access: | Get full text |
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Summary: | The integrase (Int) encoded by the lambdoid coliphage HK022 targets in its host chromosome a 21 base pair (bp) recombination site termed
attB
or BOB'.
attB
comprises two 7 bp partially inverted (palindromic) Int-binding sites of 7 bp each termed B and B'. B and B' flank a central 7 bp crossover site or ‘overlap’ (O). We show that replacing O with a random 7 bp sequence supports Int-mediated site-specific recombination as long as the cognate and larger phage recombination site
attP
features an identical O sequence. This promiscuity allowed us to identify on the human genome several native active secondary
attB
sites (‘
attB
’) with random overlaps that flank human deleterious mutations, raising the prospect of using such sites to cure the ‘
attB
’-flanked mutations by Int-catalyzed RMCE (recombinase-mediated cassette exchange) reactions. An analysis of such active and inactive ‘
attB
’s suggested a minimal 14–15 bp
attB
consensus sequence (instead of the 21 bp) with a reduced 3 bp palindrome. |
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ISSN: | 0969-7128 1476-5462 |
DOI: | 10.1038/gt.2015.9 |