The dynamics of the bacterial diversity in the redox transition and anoxic zones of the Cariaco Basin assessed by parallel tag sequencing

• Published in: FEMS microbiology ecology 2015-09, Vol.91 (9), p.fiv088-fiv088
• Main Authors: Rodriguez-Mora, Maria J., Scranton, Mary I., Taylor, Gordon T., Chistoserdov, Andrei Y.
• Format: Article
• Language: English
• Subjects: Anaerobiosis - physiology; Bacteria; Base Sequence; Basins (Geology); Biodiversity; Carbon - metabolism; Carbon cycle; Chemoautotrophy; Communities; Community involvement; Deltaproteobacteria - genetics; Deltaproteobacteria - isolation & purification; Deltaproteobacteria - metabolism; Distribution; DNA, Bacterial; Ecological monitoring; Ecology; Environmental aspects; Gammaproteobacteria; Gammaproteobacteria - genetics; Gammaproteobacteria - isolation & purification; Gammaproteobacteria - metabolism; High-Throughput Nucleotide Sequencing; Identification and classification; Microbial activity; Microbiology; Microorganisms; Nitrates - analysis; Oxidation-Reduction; Oxidizing agents; Periodic variations; Reduction (metal working); Seawater - microbiology; Sequence Analysis, DNA; Sulfate reduction; Sulfides; Sulfur; Sulfur - metabolism; Sulfur compounds; Transition zone; Venezuela; Water circulation; Water column
• ISSN: 1574-6941; 0168-6496; 1574-6941
• DOI: 10.1093/femsec/fiv088

Massively parallel tag sequencing was applied to describe the bacterial diversity in the redox transition and anoxic zones of the Cariaco Basin. In total, 14 samples from the Cariaco Basin were collected over a period of eight years from two stations. A total of 244 357 unique bacterial V6 amplicons were sequenced. The total number of operational taxonomic units (OTUs) found in this study was 4692, with a range of 511–1491 OTUs per sample. Approximately 95% of the OTUs found in the redox transition zone and anoxic layers of Cariaco are represented by less than 50 amplicons suggesting that only about 5% of the bacterial OTUs are responsible for the bulk of the microbial processes in the basin redox transition and anoxic zones. The same dominant OTUs were observed across all eight years of sampling although periodic fluctuations in their proportion were apparent. No distinctive differences were observed between the bacterial communities from the redox transition and anoxic layers of the Cariaco Basin water column. The largest proportion of amplicons belongs to Gammaproteobacteria represented mostly by sulfide oxidizers, followed by Marine Group A (originally described as SAR406; Gordon and Giovannoni 1996), a group of uncultured bacteria hypothesized to be involved in metal reduction, and sulfate-reducing Deltaproteobacteria. Gammaproteobacteria, Deltaproteobacteria and Marine Group A make up 67–90% of all V6 amplicons sequenced in this study. This strongly suggests that the basin's microbial communities are actively involved in the sulfur-related metabolism and coupling of the sulfur and carbon cycles. According to detrended canonical correspondence analysis, ecological factors such as chemoautotrophy, nitrate and oxidized and reduced sulfur compounds influence the structuring and distribution of the Cariaco microbial communities. The dominant members of the microbial community occupying the Cariaco Basin remain mostly unchanged over the nine years of observation.