Kablammo: an interactive, web-based BLAST results visualizer

Kablammo is a web-based application that produces interactive, vector-based visualizations of sequence alignments generated by BLAST. These visualizations can illustrate many features, including shared protein domains, chromosome structural modifications and genome misassembly. Kablammo can be used...

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Published in:Bioinformatics 2015-04, Vol.31 (8), p.1305-1306
Main Authors: Wintersinger, Jeff A, Wasmuth, James D
Format: Article
Language:English
Subjects:
Animals
Bioinformatics
Chromosomes
Computer Graphics
Genes, Helminth - genetics
Genome, Helminth
Genomes
Haemonchus - genetics
Interactive
Internet
Licenses
Programming Languages
Proteins
Sequence Alignment - methods
Sequence Analysis, DNA
Software
Visualization
World Wide Web
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cited_by cdi_FETCH-LOGICAL-c540t-29ded05afba9663f450071a548534896818e0e0f6be78d9043f35565f89be6983
cites cdi_FETCH-LOGICAL-c540t-29ded05afba9663f450071a548534896818e0e0f6be78d9043f35565f89be6983
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container_title Bioinformatics
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creator Wintersinger, Jeff A
Wasmuth, James D
description Kablammo is a web-based application that produces interactive, vector-based visualizations of sequence alignments generated by BLAST. These visualizations can illustrate many features, including shared protein domains, chromosome structural modifications and genome misassembly. Kablammo can be used at http://kablammo.wasmuthlab.org. For a local installation, the source code and instructions are available under the MIT license at http://github.com/jwintersinger/kablammo. jeff@wintersinger.org.
doi_str_mv 10.1093/bioinformatics/btu808
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ispartof Bioinformatics, 2015-04, Vol.31 (8), p.1305-1306
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source Oxford Journals Open Access Collection; PubMed Central
subjects Animals
Bioinformatics
Chromosomes
Computer Graphics
Genes, Helminth - genetics
Genome, Helminth
Genomes
Haemonchus - genetics
Interactive
Internet
Licenses
Programming Languages
Proteins
Sequence Alignment - methods
Sequence Analysis, DNA
Software
Visualization
World Wide Web
title Kablammo: an interactive, web-based BLAST results visualizer
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