Detection and Occurrence of Indicator Organisms and Pathogens

This review summarizes the literature pertaining to the occurrence and detection of indicator organisms and pathogens published during 2014. It is organized into the following sections: i) detection and quantification of fecal indicators and waterborne pathogens, ii) microbial source tracking (MST)...

Full description

Saved in:
Bibliographic Details
Published in:Water environment research 2015-10, Vol.87 (10), p.883-900
Main Authors: Samhan, Farag A., Kronlein, Maggie R., Fakher, Umama, Kronlein, Cathrine, Stedtfeld, Robert D., Hashsham, Syed A.
Format: Article
Language:English
Subjects:
ANTIBIOTIC RESISTANCE BACTERIA
ETHIDIUM MONOAZIDE
FECAL INDICATOR BACTERIA
Genotype & phenotype
Indicator organisms
MICROBIAL SOURCE TRACKING
Pathogens
PROPIDIUM MONOAZIDE
Citations: Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c5023-1a6ee60481bf55c42ae51390c57583157270590362ec2e7103b0461a04df480a3
cites
container_end_page 900
container_issue 10
container_start_page 883
container_title Water environment research
container_volume 87
creator Samhan, Farag A.
Kronlein, Maggie R.
Fakher, Umama
Kronlein, Cathrine
Stedtfeld, Robert D.
Hashsham, Syed A.
description This review summarizes the literature pertaining to the occurrence and detection of indicator organisms and pathogens published during 2014. It is organized into the following sections: i) detection and quantification of fecal indicators and waterborne pathogens, ii) microbial source tracking (MST) using genotypic and phenotypic methods, iii) antibiotic resistant bacteria (ARB), iv) live vs. dead cell differentiation methods, and v) next generation sequencing (NGS).
doi_str_mv 10.2175/106143015X14338845155147
format article
fullrecord <record><control><sourceid>jstor_proqu</sourceid><recordid>TN_cdi_proquest_miscellaneous_1727696909</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><jstor_id>26662303</jstor_id><sourcerecordid>26662303</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5023-1a6ee60481bf55c42ae51390c57583157270590362ec2e7103b0461a04df480a3</originalsourceid><addsrcrecordid>eNqNkc1Lw0AQxRdRrFb_BCXgxUt0Zr-SHHoQPwuFiih6C9vtpKa0Sd1NkP73bm0VEQRPM4ffe8O8x1iEcMYxUecIGqUAVC9hiDSVCpVCmWyxvbDIOFECt8MesDhwosP2vZ8CIOcgd1mHa8kBErnHelfUkG3KuopMNY6G1rbOUWUpqouoX41La5raRUM3MVXp5_6TujfNaz2hyh-wncLMPB1uZpc93Vw_Xt7Fg-Ft__JiEFsFXMRoNJEGmeKoUMpKbkihyMCqRKUCVcITUBkIzclyShDECKRGA3JcyBSM6LLTte_C1W8t-Safl97SbGYqqlufY3DQmc4g-weKqRAopAzoyS90WreuCo-sqAxCXrgyTNeUdbX3jop84cq5ccscIV-1kf_VRpAebw60ozmNv4Vf8Qegtwbeyxkt_22cP18_QBre6LKjtX7qQ0s__LXmoXbxARatmzw</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1719000119</pqid></control><display><type>article</type><title>Detection and Occurrence of Indicator Organisms and Pathogens</title><source>JSTOR Archival Journals and Primary Sources Collection</source><source>Wiley-Blackwell Read &amp; Publish Collection</source><creator>Samhan, Farag A. ; Kronlein, Maggie R. ; Fakher, Umama ; Kronlein, Cathrine ; Stedtfeld, Robert D. ; Hashsham, Syed A.</creator><creatorcontrib>Samhan, Farag A. ; Kronlein, Maggie R. ; Fakher, Umama ; Kronlein, Cathrine ; Stedtfeld, Robert D. ; Hashsham, Syed A.</creatorcontrib><description>This review summarizes the literature pertaining to the occurrence and detection of indicator organisms and pathogens published during 2014. It is organized into the following sections: i) detection and quantification of fecal indicators and waterborne pathogens, ii) microbial source tracking (MST) using genotypic and phenotypic methods, iii) antibiotic resistant bacteria (ARB), iv) live vs. dead cell differentiation methods, and v) next generation sequencing (NGS).</description><identifier>ISSN: 1061-4303</identifier><identifier>EISSN: 1554-7531</identifier><identifier>DOI: 10.2175/106143015X14338845155147</identifier><identifier>PMID: 26420074</identifier><language>eng</language><publisher>United States: John Wiley and Sons, Inc</publisher><subject>ANTIBIOTIC RESISTANCE BACTERIA ; ETHIDIUM MONOAZIDE ; FECAL INDICATOR BACTERIA ; Genotype &amp; phenotype ; Indicator organisms ; MICROBIAL SOURCE TRACKING ; Pathogens ; PROPIDIUM MONOAZIDE</subject><ispartof>Water environment research, 2015-10, Vol.87 (10), p.883-900</ispartof><rights>Copyright © 2015 Water Environment Federation</rights><rights>2015 Water Environment Federation</rights><rights>Copyright Water Environment Federation Oct 1, 2015</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5023-1a6ee60481bf55c42ae51390c57583157270590362ec2e7103b0461a04df480a3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26662303$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26662303$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,58237,58470</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26420074$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Samhan, Farag A.</creatorcontrib><creatorcontrib>Kronlein, Maggie R.</creatorcontrib><creatorcontrib>Fakher, Umama</creatorcontrib><creatorcontrib>Kronlein, Cathrine</creatorcontrib><creatorcontrib>Stedtfeld, Robert D.</creatorcontrib><creatorcontrib>Hashsham, Syed A.</creatorcontrib><title>Detection and Occurrence of Indicator Organisms and Pathogens</title><title>Water environment research</title><addtitle>Water Environ Res</addtitle><description>This review summarizes the literature pertaining to the occurrence and detection of indicator organisms and pathogens published during 2014. It is organized into the following sections: i) detection and quantification of fecal indicators and waterborne pathogens, ii) microbial source tracking (MST) using genotypic and phenotypic methods, iii) antibiotic resistant bacteria (ARB), iv) live vs. dead cell differentiation methods, and v) next generation sequencing (NGS).</description><subject>ANTIBIOTIC RESISTANCE BACTERIA</subject><subject>ETHIDIUM MONOAZIDE</subject><subject>FECAL INDICATOR BACTERIA</subject><subject>Genotype &amp; phenotype</subject><subject>Indicator organisms</subject><subject>MICROBIAL SOURCE TRACKING</subject><subject>Pathogens</subject><subject>PROPIDIUM MONOAZIDE</subject><issn>1061-4303</issn><issn>1554-7531</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNqNkc1Lw0AQxRdRrFb_BCXgxUt0Zr-SHHoQPwuFiih6C9vtpKa0Sd1NkP73bm0VEQRPM4ffe8O8x1iEcMYxUecIGqUAVC9hiDSVCpVCmWyxvbDIOFECt8MesDhwosP2vZ8CIOcgd1mHa8kBErnHelfUkG3KuopMNY6G1rbOUWUpqouoX41La5raRUM3MVXp5_6TujfNaz2hyh-wncLMPB1uZpc93Vw_Xt7Fg-Ft__JiEFsFXMRoNJEGmeKoUMpKbkihyMCqRKUCVcITUBkIzclyShDECKRGA3JcyBSM6LLTte_C1W8t-Safl97SbGYqqlufY3DQmc4g-weKqRAopAzoyS90WreuCo-sqAxCXrgyTNeUdbX3jop84cq5ccscIV-1kf_VRpAebw60ozmNv4Vf8Qegtwbeyxkt_22cP18_QBre6LKjtX7qQ0s__LXmoXbxARatmzw</recordid><startdate>201510</startdate><enddate>201510</enddate><creator>Samhan, Farag A.</creator><creator>Kronlein, Maggie R.</creator><creator>Fakher, Umama</creator><creator>Kronlein, Cathrine</creator><creator>Stedtfeld, Robert D.</creator><creator>Hashsham, Syed A.</creator><general>John Wiley and Sons, Inc</general><general>Water Environment Federation</general><general>Blackwell Publishing Ltd</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QH</scope><scope>7QO</scope><scope>7ST</scope><scope>7T7</scope><scope>7U7</scope><scope>7UA</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H97</scope><scope>K9.</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>SOI</scope><scope>7X8</scope></search><sort><creationdate>201510</creationdate><title>Detection and Occurrence of Indicator Organisms and Pathogens</title><author>Samhan, Farag A. ; Kronlein, Maggie R. ; Fakher, Umama ; Kronlein, Cathrine ; Stedtfeld, Robert D. ; Hashsham, Syed A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5023-1a6ee60481bf55c42ae51390c57583157270590362ec2e7103b0461a04df480a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>ANTIBIOTIC RESISTANCE BACTERIA</topic><topic>ETHIDIUM MONOAZIDE</topic><topic>FECAL INDICATOR BACTERIA</topic><topic>Genotype &amp; phenotype</topic><topic>Indicator organisms</topic><topic>MICROBIAL SOURCE TRACKING</topic><topic>Pathogens</topic><topic>PROPIDIUM MONOAZIDE</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Samhan, Farag A.</creatorcontrib><creatorcontrib>Kronlein, Maggie R.</creatorcontrib><creatorcontrib>Fakher, Umama</creatorcontrib><creatorcontrib>Kronlein, Cathrine</creatorcontrib><creatorcontrib>Stedtfeld, Robert D.</creatorcontrib><creatorcontrib>Hashsham, Syed A.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Aqualine</collection><collection>Biotechnology Research Abstracts</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Toxicology Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science &amp; Fisheries Abstracts (ASFA) 3: Aquatic Pollution &amp; Environmental Quality</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Aquatic Science &amp; Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Water environment research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Samhan, Farag A.</au><au>Kronlein, Maggie R.</au><au>Fakher, Umama</au><au>Kronlein, Cathrine</au><au>Stedtfeld, Robert D.</au><au>Hashsham, Syed A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Detection and Occurrence of Indicator Organisms and Pathogens</atitle><jtitle>Water environment research</jtitle><addtitle>Water Environ Res</addtitle><date>2015-10</date><risdate>2015</risdate><volume>87</volume><issue>10</issue><spage>883</spage><epage>900</epage><pages>883-900</pages><issn>1061-4303</issn><eissn>1554-7531</eissn><abstract>This review summarizes the literature pertaining to the occurrence and detection of indicator organisms and pathogens published during 2014. It is organized into the following sections: i) detection and quantification of fecal indicators and waterborne pathogens, ii) microbial source tracking (MST) using genotypic and phenotypic methods, iii) antibiotic resistant bacteria (ARB), iv) live vs. dead cell differentiation methods, and v) next generation sequencing (NGS).</abstract><cop>United States</cop><pub>John Wiley and Sons, Inc</pub><pmid>26420074</pmid><doi>10.2175/106143015X14338845155147</doi><tpages>18</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1061-4303
ispartof Water environment research, 2015-10, Vol.87 (10), p.883-900
issn 1061-4303
1554-7531
language eng
recordid cdi_proquest_miscellaneous_1727696909
source JSTOR Archival Journals and Primary Sources Collection; Wiley-Blackwell Read & Publish Collection
subjects ANTIBIOTIC RESISTANCE BACTERIA
ETHIDIUM MONOAZIDE
FECAL INDICATOR BACTERIA
Genotype & phenotype
Indicator organisms
MICROBIAL SOURCE TRACKING
Pathogens
PROPIDIUM MONOAZIDE
title Detection and Occurrence of Indicator Organisms and Pathogens
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-08T18%3A02%3A33IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-jstor_proqu&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Detection%20and%20Occurrence%20of%20Indicator%20Organisms%20and%20Pathogens&rft.jtitle=Water%20environment%20research&rft.au=Samhan,%20Farag%20A.&rft.date=2015-10&rft.volume=87&rft.issue=10&rft.spage=883&rft.epage=900&rft.pages=883-900&rft.issn=1061-4303&rft.eissn=1554-7531&rft_id=info:doi/10.2175/106143015X14338845155147&rft_dat=%3Cjstor_proqu%3E26662303%3C/jstor_proqu%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c5023-1a6ee60481bf55c42ae51390c57583157270590362ec2e7103b0461a04df480a3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1719000119&rft_id=info:pmid/26420074&rft_jstor_id=26662303&rfr_iscdi=true