Confirmation of relationships among Boesenbergia (Zingiberaceae) and related genera by RAPD
The relationships among 19 accessions of Zingiberaceae belonging to 11 species of Boesenbergia, six species of Kaempferia, and two species of Scaphochlamys from Southern Thailand were studied using random amplified polymorphic DNA (RAPD) profiles from leaf tissue samples. The RAPD was carried out us...
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Published in: | Biochemical systematics and ecology 2005-02, Vol.33 (2), p.159-170 |
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creator | Vanijajiva, Ongkarn Sirirugsa, Puangpen Suvachittanont, Wallie |
description | The relationships among 19 accessions of Zingiberaceae belonging to 11 species of
Boesenbergia, six species of
Kaempferia, and two species of
Scaphochlamys from Southern Thailand were studied using random amplified polymorphic DNA (RAPD) profiles from leaf tissue samples. The RAPD was carried out using 10 random decamer arbitrary primers. Amplification occurred in five out of 10 tested primers (OPAM-01, OPAM-03, OPAM-12, OPB-14, OPZ-03). Total of 53 amplified bands were observed. Data obtained from the RAPD fingerprints from the samples clarified some doubts in morphological classification. The data were analyzed for the Nei and Li's Dice similarity coefficient for pair-wise comparison between individual samples and the distance matrix. The dendrogram resulting from cluster analysis, UPGMA and a principal component analysis of the RAPD result confirms a higher degree of relationship between
Boesenbergia and
Scaphochlamys than between
Boesenbergia and
Kaempferia. |
doi_str_mv | 10.1016/j.bse.2004.06.012 |
format | article |
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Boesenbergia, six species of
Kaempferia, and two species of
Scaphochlamys from Southern Thailand were studied using random amplified polymorphic DNA (RAPD) profiles from leaf tissue samples. The RAPD was carried out using 10 random decamer arbitrary primers. Amplification occurred in five out of 10 tested primers (OPAM-01, OPAM-03, OPAM-12, OPB-14, OPZ-03). Total of 53 amplified bands were observed. Data obtained from the RAPD fingerprints from the samples clarified some doubts in morphological classification. The data were analyzed for the Nei and Li's Dice similarity coefficient for pair-wise comparison between individual samples and the distance matrix. The dendrogram resulting from cluster analysis, UPGMA and a principal component analysis of the RAPD result confirms a higher degree of relationship between
Boesenbergia and
Scaphochlamys than between
Boesenbergia and
Kaempferia.</description><identifier>ISSN: 0305-1978</identifier><identifier>EISSN: 1873-2925</identifier><identifier>DOI: 10.1016/j.bse.2004.06.012</identifier><language>eng</language><publisher>Elsevier Ltd</publisher><subject>Boesenbergia ; chemotaxonomy ; Genetic relationship ; Kaempferia ; phylogeny ; random amplified polymorphic DNA technique ; RAPD ; Scaphochlamys ; Zingiberaceae</subject><ispartof>Biochemical systematics and ecology, 2005-02, Vol.33 (2), p.159-170</ispartof><rights>2004 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c352t-8aa092b5e8ae75f7c6bf579e727aba1b5146aff148e043e643a6f9aed288d1e03</citedby><cites>FETCH-LOGICAL-c352t-8aa092b5e8ae75f7c6bf579e727aba1b5146aff148e043e643a6f9aed288d1e03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids></links><search><creatorcontrib>Vanijajiva, Ongkarn</creatorcontrib><creatorcontrib>Sirirugsa, Puangpen</creatorcontrib><creatorcontrib>Suvachittanont, Wallie</creatorcontrib><title>Confirmation of relationships among Boesenbergia (Zingiberaceae) and related genera by RAPD</title><title>Biochemical systematics and ecology</title><description>The relationships among 19 accessions of Zingiberaceae belonging to 11 species of
Boesenbergia, six species of
Kaempferia, and two species of
Scaphochlamys from Southern Thailand were studied using random amplified polymorphic DNA (RAPD) profiles from leaf tissue samples. The RAPD was carried out using 10 random decamer arbitrary primers. Amplification occurred in five out of 10 tested primers (OPAM-01, OPAM-03, OPAM-12, OPB-14, OPZ-03). Total of 53 amplified bands were observed. Data obtained from the RAPD fingerprints from the samples clarified some doubts in morphological classification. The data were analyzed for the Nei and Li's Dice similarity coefficient for pair-wise comparison between individual samples and the distance matrix. The dendrogram resulting from cluster analysis, UPGMA and a principal component analysis of the RAPD result confirms a higher degree of relationship between
Boesenbergia and
Scaphochlamys than between
Boesenbergia and
Kaempferia.</description><subject>Boesenbergia</subject><subject>chemotaxonomy</subject><subject>Genetic relationship</subject><subject>Kaempferia</subject><subject>phylogeny</subject><subject>random amplified polymorphic DNA technique</subject><subject>RAPD</subject><subject>Scaphochlamys</subject><subject>Zingiberaceae</subject><issn>0305-1978</issn><issn>1873-2925</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><recordid>eNp9kMGO0zAQhi0EEmXhATjhE4JDwthJbEecdgu7IFUCAb3AwZok4-Cqtbt2itS3J91w5jQe6_9-aT7GXgooBQj1bld2mUoJUJegShDyEVsJo6tCtrJ5zFZQQVOIVpun7FnOOwBoaqlX7Nc6BufTAScfA4-OJ9o_vPNvf8wcDzGM_CZSptBRGj3yNz99GP28YE9IbzmGYYFo4COF-Z93Z_7t-uuH5-yJw32mF__mFdvefvyx_lRsvtx9Xl9vir5q5FQYRGhl15BB0o3Tvepco1vSUmOHomtErdA5URuCuiJVV6hcizRIYwZBUF2x10vvMcX7E-XJHnzuab_HQPGUrdC1kaZSc1AswT7FnBM5e0z-gOlsBdiLRruzs0Z70WhB2VnjzLxaGIfR4ph8ttvvEkQFMwBaXVrfLwmab_zjKdncewo9DT5RP9kh-v_0_wVcC4Rv</recordid><startdate>20050201</startdate><enddate>20050201</enddate><creator>Vanijajiva, Ongkarn</creator><creator>Sirirugsa, Puangpen</creator><creator>Suvachittanont, Wallie</creator><general>Elsevier Ltd</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20050201</creationdate><title>Confirmation of relationships among Boesenbergia (Zingiberaceae) and related genera by RAPD</title><author>Vanijajiva, Ongkarn ; Sirirugsa, Puangpen ; Suvachittanont, Wallie</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c352t-8aa092b5e8ae75f7c6bf579e727aba1b5146aff148e043e643a6f9aed288d1e03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Boesenbergia</topic><topic>chemotaxonomy</topic><topic>Genetic relationship</topic><topic>Kaempferia</topic><topic>phylogeny</topic><topic>random amplified polymorphic DNA technique</topic><topic>RAPD</topic><topic>Scaphochlamys</topic><topic>Zingiberaceae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Vanijajiva, Ongkarn</creatorcontrib><creatorcontrib>Sirirugsa, Puangpen</creatorcontrib><creatorcontrib>Suvachittanont, Wallie</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Biochemical systematics and ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Vanijajiva, Ongkarn</au><au>Sirirugsa, Puangpen</au><au>Suvachittanont, Wallie</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Confirmation of relationships among Boesenbergia (Zingiberaceae) and related genera by RAPD</atitle><jtitle>Biochemical systematics and ecology</jtitle><date>2005-02-01</date><risdate>2005</risdate><volume>33</volume><issue>2</issue><spage>159</spage><epage>170</epage><pages>159-170</pages><issn>0305-1978</issn><eissn>1873-2925</eissn><abstract>The relationships among 19 accessions of Zingiberaceae belonging to 11 species of
Boesenbergia, six species of
Kaempferia, and two species of
Scaphochlamys from Southern Thailand were studied using random amplified polymorphic DNA (RAPD) profiles from leaf tissue samples. The RAPD was carried out using 10 random decamer arbitrary primers. Amplification occurred in five out of 10 tested primers (OPAM-01, OPAM-03, OPAM-12, OPB-14, OPZ-03). Total of 53 amplified bands were observed. Data obtained from the RAPD fingerprints from the samples clarified some doubts in morphological classification. The data were analyzed for the Nei and Li's Dice similarity coefficient for pair-wise comparison between individual samples and the distance matrix. The dendrogram resulting from cluster analysis, UPGMA and a principal component analysis of the RAPD result confirms a higher degree of relationship between
Boesenbergia and
Scaphochlamys than between
Boesenbergia and
Kaempferia.</abstract><pub>Elsevier Ltd</pub><doi>10.1016/j.bse.2004.06.012</doi><tpages>12</tpages></addata></record> |
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subjects | Boesenbergia chemotaxonomy Genetic relationship Kaempferia phylogeny random amplified polymorphic DNA technique RAPD Scaphochlamys Zingiberaceae |
title | Confirmation of relationships among Boesenbergia (Zingiberaceae) and related genera by RAPD |
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