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Agrobacterium arsenijevicii sp. nov., isolated from crown gall tumors on raspberry and cherry plum
Two plant-tumorigenic strains KFB 330T and KFB 335 isolated from galls on raspberry (Rubus idaeus) in Serbia, and a non-pathogenic strain AL51.1 recovered from a cherry plum (Prunus cerasifera) tumor in Poland, were genotypically and phenotypically characterized. Phylogenetic reconstruction based on...
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| Published in: | Systematic and applied microbiology 2015-09, Vol.38 (6), p.373-378 |
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| Main Authors: | , , , , , , |
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| cites | cdi_FETCH-LOGICAL-c377t-5820fd0cd86b2299c383fc2dcc8cc7a260416a31027c446f4d9f8b8c70a0384b3 |
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| container_title | Systematic and applied microbiology |
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| creator | Kuzmanović, Nemanja Puławska, Joanna Prokić, Anđelka Ivanović, Milan Zlatković, Nevena Jones, Jeffrey B. Obradović, Aleksa |
| description | Two plant-tumorigenic strains KFB 330T and KFB 335 isolated from galls on raspberry (Rubus idaeus) in Serbia, and a non-pathogenic strain AL51.1 recovered from a cherry plum (Prunus cerasifera) tumor in Poland, were genotypically and phenotypically characterized. Phylogenetic reconstruction based on 16S rDNA placed them within the genus Agrobacterium, with A. nepotum as their closest relative. Multilocus sequence analysis (MLSA) based on the partial sequences of atpD, glnA, gyrB, recA and rpoB housekeeping genes suggested that these three strains represent a new Agrobacterium species, that clustered with type strains of A. nepotum, A. radiobacter, “A. fabrum” and A. pusense. This was further supported by average nucleotide identity values ( |
| doi_str_mv | 10.1016/j.syapm.2015.06.001 |
| format | article |
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Phylogenetic reconstruction based on 16S rDNA placed them within the genus Agrobacterium, with A. nepotum as their closest relative. Multilocus sequence analysis (MLSA) based on the partial sequences of atpD, glnA, gyrB, recA and rpoB housekeeping genes suggested that these three strains represent a new Agrobacterium species, that clustered with type strains of A. nepotum, A. radiobacter, “A. fabrum” and A. pusense. This was further supported by average nucleotide identity values (<92%) between the whole genome sequences of strain KFB 330T and related Agrobacterium species. The major cellular fatty acids of the novel strains were 18:1 w7c (72.8–77.87%) and 16:0 (6.82–8.58%). Phenotypic features allowed their differentiation from closely related species. Polyphasic characterization showed that the three strains represent a novel species of the genus Agrobacterium, for which the name Agrobacterium arsenijevicii sp. nov. is proposed. The type strain of A. arsenijevicii is KFB 330T (=CFBP 8308T=LMG 28674T).</description><identifier>ISSN: 0723-2020</identifier><identifier>EISSN: 1618-0984</identifier><identifier>DOI: 10.1016/j.syapm.2015.06.001</identifier><identifier>PMID: 26117193</identifier><language>eng</language><publisher>Germany: Elsevier GmbH</publisher><subject>16S rDNA ; Agrobacterium ; Agrobacterium - chemistry ; Agrobacterium - classification ; Agrobacterium - genetics ; Agrobacterium - isolation & purification ; ANI ; Bacterial Typing Techniques ; Cluster Analysis ; Crown gall ; Cytosol - chemistry ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fatty Acids - analysis ; Genes, Essential ; MLSA ; Molecular Sequence Data ; Molecular Typing ; Phylogeny ; Plant Tumors - microbiology ; Poland ; Prunus ; Prunus cerasifera ; Prunus domestica - microbiology ; RNA, Ribosomal, 16S - genetics ; Rubus - microbiology ; Rubus idaeus ; Sequence Analysis, DNA ; Serbia ; Taxonomy</subject><ispartof>Systematic and applied microbiology, 2015-09, Vol.38 (6), p.373-378</ispartof><rights>2015 Elsevier GmbH</rights><rights>Copyright © 2015 Elsevier GmbH. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c377t-5820fd0cd86b2299c383fc2dcc8cc7a260416a31027c446f4d9f8b8c70a0384b3</citedby><cites>FETCH-LOGICAL-c377t-5820fd0cd86b2299c383fc2dcc8cc7a260416a31027c446f4d9f8b8c70a0384b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26117193$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kuzmanović, Nemanja</creatorcontrib><creatorcontrib>Puławska, Joanna</creatorcontrib><creatorcontrib>Prokić, Anđelka</creatorcontrib><creatorcontrib>Ivanović, Milan</creatorcontrib><creatorcontrib>Zlatković, Nevena</creatorcontrib><creatorcontrib>Jones, Jeffrey B.</creatorcontrib><creatorcontrib>Obradović, Aleksa</creatorcontrib><title>Agrobacterium arsenijevicii sp. nov., isolated from crown gall tumors on raspberry and cherry plum</title><title>Systematic and applied microbiology</title><addtitle>Syst Appl Microbiol</addtitle><description>Two plant-tumorigenic strains KFB 330T and KFB 335 isolated from galls on raspberry (Rubus idaeus) in Serbia, and a non-pathogenic strain AL51.1 recovered from a cherry plum (Prunus cerasifera) tumor in Poland, were genotypically and phenotypically characterized. Phylogenetic reconstruction based on 16S rDNA placed them within the genus Agrobacterium, with A. nepotum as their closest relative. Multilocus sequence analysis (MLSA) based on the partial sequences of atpD, glnA, gyrB, recA and rpoB housekeeping genes suggested that these three strains represent a new Agrobacterium species, that clustered with type strains of A. nepotum, A. radiobacter, “A. fabrum” and A. pusense. This was further supported by average nucleotide identity values (<92%) between the whole genome sequences of strain KFB 330T and related Agrobacterium species. The major cellular fatty acids of the novel strains were 18:1 w7c (72.8–77.87%) and 16:0 (6.82–8.58%). Phenotypic features allowed their differentiation from closely related species. Polyphasic characterization showed that the three strains represent a novel species of the genus Agrobacterium, for which the name Agrobacterium arsenijevicii sp. nov. is proposed. The type strain of A. arsenijevicii is KFB 330T (=CFBP 8308T=LMG 28674T).</description><subject>16S rDNA</subject><subject>Agrobacterium</subject><subject>Agrobacterium - chemistry</subject><subject>Agrobacterium - classification</subject><subject>Agrobacterium - genetics</subject><subject>Agrobacterium - isolation & purification</subject><subject>ANI</subject><subject>Bacterial Typing Techniques</subject><subject>Cluster Analysis</subject><subject>Crown gall</subject><subject>Cytosol - chemistry</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - analysis</subject><subject>Genes, Essential</subject><subject>MLSA</subject><subject>Molecular Sequence Data</subject><subject>Molecular Typing</subject><subject>Phylogeny</subject><subject>Plant Tumors - microbiology</subject><subject>Poland</subject><subject>Prunus</subject><subject>Prunus cerasifera</subject><subject>Prunus domestica - microbiology</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Rubus - microbiology</subject><subject>Rubus idaeus</subject><subject>Sequence Analysis, DNA</subject><subject>Serbia</subject><subject>Taxonomy</subject><issn>0723-2020</issn><issn>1618-0984</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNqNkU9P3DAQxa2qqGxpPwFS5WMPJIztxHYOHBCifyQkLu3ZcsYOeJXEwU4W7bcnsJQj6mnm8HvzNO8RcsqgZMDk-bbMezsNJQdWlyBLAPaBbJhkuoBGVx_JBhQXBQcOx-RzztsVqBrJPpFjLhlTrBEb0l7epdhanH0Ky0Btyn4MW78LGALNU0nHuCvPaMixt7N3tEtxoJji40jvbN_TeRliyjSONNk8tT6lPbWjo3j_sk79MnwhR53ts__6Ok_I3x_Xf65-FTe3P39fXd4UKJSai1pz6Byg07LlvGlQaNEhd4gaUVkuoWLSCgZcYVXJrnJNp1uNCiwIXbXihHw_3J1SfFh8ns0QMvq-t6OPSzZM1YyDlqr6D5TxmtfA-YqKA7o-nXPynZlSGGzaGwbmuQezNS89mOceDEizxryqvr0aLO3g3ZvmX_ArcHEA_JrILvhkMgY_oncheZyNi-FdgyeYxJpf</recordid><startdate>20150901</startdate><enddate>20150901</enddate><creator>Kuzmanović, Nemanja</creator><creator>Puławska, Joanna</creator><creator>Prokić, Anđelka</creator><creator>Ivanović, Milan</creator><creator>Zlatković, Nevena</creator><creator>Jones, Jeffrey B.</creator><creator>Obradović, Aleksa</creator><general>Elsevier GmbH</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>20150901</creationdate><title>Agrobacterium arsenijevicii sp. nov., isolated from crown gall tumors on raspberry and cherry plum</title><author>Kuzmanović, Nemanja ; Puławska, Joanna ; Prokić, Anđelka ; Ivanović, Milan ; Zlatković, Nevena ; Jones, Jeffrey B. ; Obradović, Aleksa</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c377t-5820fd0cd86b2299c383fc2dcc8cc7a260416a31027c446f4d9f8b8c70a0384b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>16S rDNA</topic><topic>Agrobacterium</topic><topic>Agrobacterium - chemistry</topic><topic>Agrobacterium - classification</topic><topic>Agrobacterium - genetics</topic><topic>Agrobacterium - isolation & purification</topic><topic>ANI</topic><topic>Bacterial Typing Techniques</topic><topic>Cluster Analysis</topic><topic>Crown gall</topic><topic>Cytosol - chemistry</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - analysis</topic><topic>Genes, Essential</topic><topic>MLSA</topic><topic>Molecular Sequence Data</topic><topic>Molecular Typing</topic><topic>Phylogeny</topic><topic>Plant Tumors - microbiology</topic><topic>Poland</topic><topic>Prunus</topic><topic>Prunus cerasifera</topic><topic>Prunus domestica - microbiology</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Rubus - microbiology</topic><topic>Rubus idaeus</topic><topic>Sequence Analysis, DNA</topic><topic>Serbia</topic><topic>Taxonomy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kuzmanović, Nemanja</creatorcontrib><creatorcontrib>Puławska, Joanna</creatorcontrib><creatorcontrib>Prokić, Anđelka</creatorcontrib><creatorcontrib>Ivanović, Milan</creatorcontrib><creatorcontrib>Zlatković, Nevena</creatorcontrib><creatorcontrib>Jones, Jeffrey B.</creatorcontrib><creatorcontrib>Obradović, Aleksa</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>Systematic and applied microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kuzmanović, Nemanja</au><au>Puławska, Joanna</au><au>Prokić, Anđelka</au><au>Ivanović, Milan</au><au>Zlatković, Nevena</au><au>Jones, Jeffrey B.</au><au>Obradović, Aleksa</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Agrobacterium arsenijevicii sp. nov., isolated from crown gall tumors on raspberry and cherry plum</atitle><jtitle>Systematic and applied microbiology</jtitle><addtitle>Syst Appl Microbiol</addtitle><date>2015-09-01</date><risdate>2015</risdate><volume>38</volume><issue>6</issue><spage>373</spage><epage>378</epage><pages>373-378</pages><issn>0723-2020</issn><eissn>1618-0984</eissn><abstract>Two plant-tumorigenic strains KFB 330T and KFB 335 isolated from galls on raspberry (Rubus idaeus) in Serbia, and a non-pathogenic strain AL51.1 recovered from a cherry plum (Prunus cerasifera) tumor in Poland, were genotypically and phenotypically characterized. Phylogenetic reconstruction based on 16S rDNA placed them within the genus Agrobacterium, with A. nepotum as their closest relative. Multilocus sequence analysis (MLSA) based on the partial sequences of atpD, glnA, gyrB, recA and rpoB housekeeping genes suggested that these three strains represent a new Agrobacterium species, that clustered with type strains of A. nepotum, A. radiobacter, “A. fabrum” and A. pusense. This was further supported by average nucleotide identity values (<92%) between the whole genome sequences of strain KFB 330T and related Agrobacterium species. The major cellular fatty acids of the novel strains were 18:1 w7c (72.8–77.87%) and 16:0 (6.82–8.58%). Phenotypic features allowed their differentiation from closely related species. Polyphasic characterization showed that the three strains represent a novel species of the genus Agrobacterium, for which the name Agrobacterium arsenijevicii sp. nov. is proposed. The type strain of A. arsenijevicii is KFB 330T (=CFBP 8308T=LMG 28674T).</abstract><cop>Germany</cop><pub>Elsevier GmbH</pub><pmid>26117193</pmid><doi>10.1016/j.syapm.2015.06.001</doi><tpages>6</tpages></addata></record> |
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| ispartof | Systematic and applied microbiology, 2015-09, Vol.38 (6), p.373-378 |
| issn | 0723-2020 1618-0984 |
| language | eng |
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| source | Elsevier |
| subjects | 16S rDNA Agrobacterium Agrobacterium - chemistry Agrobacterium - classification Agrobacterium - genetics Agrobacterium - isolation & purification ANI Bacterial Typing Techniques Cluster Analysis Crown gall Cytosol - chemistry DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fatty Acids - analysis Genes, Essential MLSA Molecular Sequence Data Molecular Typing Phylogeny Plant Tumors - microbiology Poland Prunus Prunus cerasifera Prunus domestica - microbiology RNA, Ribosomal, 16S - genetics Rubus - microbiology Rubus idaeus Sequence Analysis, DNA Serbia Taxonomy |
| title | Agrobacterium arsenijevicii sp. nov., isolated from crown gall tumors on raspberry and cherry plum |
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