Upregulation of RHOA and NKIRAS1 genes in lung tumors is associated with loss of their methylation as well as with methylation of regulatory miRNA genes

• Published in: Biochemistry (Moscow) 2015-04, Vol.80 (4), p.483-494
• Main Authors: Braga, E. A., Loginov, V. I., Pronina, I. V., Khodyrev, D. S., Rykov, S. V., Burdennyy, A. M., Friedman, M. V., Kazubskaya, T. P., Kubatiev, A. A., Kushlinskii, N. E.
• Format: Article
• Language: English
• Subjects: Biochemistry; Biomedical and Life Sciences; Biomedicine; Bioorganic Chemistry; Carcinoma, Non-Small-Cell Lung - genetics; Carrier Proteins - genetics; CpG Islands; DNA Methylation; Gene Expression Regulation, Neoplastic; Gene Silencing; Genes; Genetic aspects; Health aspects; Humans; Islands; Life Sciences; Lung cancer; Lung Neoplasms - genetics; Lung tumors; Lungs; Methods; Methylation; Microbiology; MicroRNA; MicroRNAs - genetics; Observations; rhoA GTP-Binding Protein - genetics; Ribonucleic acid; RNA; RNA sequencing; Studies; Tumors; Up-Regulation
• ISSN: 0006-2979; 1608-3040
• DOI: 10.1134/S0006297915040124

Methylation of CpG-islands in promoter regions as well as interaction of miRNAs with messenger RNAs of target genes are related to multilayer mechanisms regulating gene expression. The goal of this study was to assess a possibility for miRNA gene methylation to influence indirectly activation of their target genes in lung tumors. By using a unified collection of samples of non-small cell lung cancer, it was demonstrated that elevated levels of mRNA for RHOA and NKIRAS1 genes were significantly (Spearman rank correlation, P < 10 −11 ) associated both with loss of methylation in their CpG-islands and methylation in a number of miRNA genes, which, according to the miRWalk database, were predicted to possess regulatory functions. Novel potential regulatory miRNAs for RHOA (miR-9-1/-3, -34b/c, -129-2, -125b-1, -375, -1258) and NKIRAS1 (miR-34b/c, -129-2, -125b-1, -193a, -124a-1/-2/-3, -212, -132) genes in lung cancer were identified.