Prokaryotic Community in Lacustrine Sediments of Byers Peninsula (Livingston Island, Maritime Antarctica)

• Published in: Microbial ecology 2016-02, Vol.71 (2), p.387-400
• Main Authors: Gugliandolo, Concetta, Michaud, Luigi, Lo Giudice, Angelina, Lentini, Valeria, Rochera, Carlos, Camacho, Antonio, Maugeri, Teresa Luciana
• Format: Article
• Language: English
• Subjects: 4',6-diamidino-2-phenylindole; Acidobacteria; Actinobacteria; alpha-Proteobacteria; animals; Antarctic Regions; Archaea; Archaea - classification; Archaea - genetics; Archaea - isolation & purification; Bacteria; Bacteria - classification; Bacteria - genetics; Bacteria - isolation & purification; bacterial communities; beta-Proteobacteria; Biodiversity; Biomedical and Life Sciences; Brackish; Cyanobacteria; delta-Proteobacteria; Ecology; ENVIRONMENTAL MICROBIOLOGY; epsilon-Proteobacteria; Eutrophic environments; Eutrophic lakes; Eutrophication; fluorescence; fluorescence in situ hybridization; Freshwater; gamma-Proteobacteria; Geoecology/Natural Processes; Geologic Sediments - chemistry; Geologic Sediments - microbiology; lacustrine sediments; lakes; Lakes - chemistry; Lakes - microbiology; Life Sciences; Microbial Ecology; Microbiology; Nature Conservation; Nutrient sources; Nutrient status; Phylogeny; Planctomycetes; ponds; Proteobacteria; ribosomal RNA; Sediment samplers; sequence analysis; Streams; summer; Verrucomicrobia; Verrucomicrobium; Water Quality/Water Pollution
• ISSN: 0095-3628; 1432-184X
• DOI: 10.1007/s00248-015-0666-8

Byers Peninsula (Livingston Island, Antarctica), the largest seasonally ice-free region of the Maritime Antarctica, holds a large number of lakes, ponds, and streams. The prokaryotic structure and bacterial diversity in sediment samples collected during the 2008–2009 austral summer from five inland lakes, two coastal lakes, and an estuarine site were analyzed by Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (CARD-FISH) and 16S rRNA 454 tag pyrosequencing techniques, respectively. Differently from inland lakes, which range around the oligotrophic status, coastal lakes are eutrophic environments, enriched by nutrient inputs from marine animals. Although the prokaryotic abundances (estimated as DAPI stained cells) in sediment samples were quite similar among inland and coastal lakes, Bacteria always far dominated over Archaea. Despite the phylogenetic analysis indicated that most of sequences were affiliated to a few taxonomic groups, mainly referred to Proteobacteria, Bacteroidetes, and Actinobacteria, their relative abundances greatly differed from each site. Differences in bacterial composition showed that lacustrine sediments were more phyla rich than the estuarine sediment. Proteobacterial classes in lacustrine samples were dominated by Betaproteobacteria (followed by Alphaproteobacteria, Deltaproteobacteria, and Gammaproteobacteria), while in the estuarine sample, they were mainly related to Gammaproteobacteria (followed by Deltaproteobacteria, Epsilonproteobacteria, Alphaproteobacteria, and Betaproteobacteria). Higher number of sequences of Alphaproteobacteria, Cyanobacteria, Verrucomicrobia, and Planctomycetes were observed in sediments of inland lakes compared to those of coastal lakes, whereas Chloroflexi were relatively more abundant in the sediments of coastal eutrophic lakes. As demonstrated by the great number of dominant bacterial genera, bacterial diversity was higher in the sediments of inland lakes than that in coastal lakes. Ilumatobacter (Actinobacteria), Gp16 (Acidobacteria), and Gemmatimonas (Gemmatimonadetes) were recovered as dominant genera in both inland and coastal lakes, but not in the estuarine sample, indicating that they may be useful markers of Antarctic lakes. The proximity to the sea, the different lake depths and the external or internal origin of the nutrient sources shape the bacterial communities composition in lacustrine sediments of Byers Peninsula.