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Development of a loop-mediated isothermal amplification targeting a gene within the pyruvate dehydrogenase complex, the pdhA gene, for rapid detection of Mycoplasma gallisepticum
Mycoplasma gallisepticum infections impose a significant economic burden on the poultry industry. In the current study, a loop-mediated isothermal amplification (LAMP) assay was developed and optimized to detect M. gallisepticum based on a gene within the pyruvate dehydrogenase complex, the pdhA gen...
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Published in: | Journal of veterinary diagnostic investigation 2015-05, Vol.27 (3), p.260-267 |
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container_title | Journal of veterinary diagnostic investigation |
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creator | Zhang, Fanqing Bao, Shijun Yu, Shengqing Cheng, Jinghua Tan, Lei Qiu, Xvsheng Song, Cuiping Dai, Yabin Fei, Rongmei Ding, Chan |
description | Mycoplasma gallisepticum infections impose a significant economic burden on the poultry industry. In the current study, a loop-mediated isothermal amplification (LAMP) assay was developed and optimized to detect M. gallisepticum based on a gene within the pyruvate dehydrogenase complex, the pdhA gene, which codes for the major subunit (E1α) in the complex. The reaction conditions were optimized, and the specificity was confirmed by successful amplification of several M. gallisepticum strains, while no amplification was detected with 20 other major bacterial and viral pathogens of poultry. Additionally, the LAMP assay achieved 10-fold higher sensitivity than an existing polymerase chain reaction (PCR) method. The LAMP assay was applied to swab samples collected from poultry farms and compared with PCR. The positive detection rate was 20.2% (37/183) by LAMP and 13.1% (24/183) by PCR. The LAMP assay could provide a cost-effective, quick, and sensitive method for the detection of M. gallisepticum. |
doi_str_mv | 10.1177/1040638715584155 |
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In the current study, a loop-mediated isothermal amplification (LAMP) assay was developed and optimized to detect M. gallisepticum based on a gene within the pyruvate dehydrogenase complex, the pdhA gene, which codes for the major subunit (E1α) in the complex. The reaction conditions were optimized, and the specificity was confirmed by successful amplification of several M. gallisepticum strains, while no amplification was detected with 20 other major bacterial and viral pathogens of poultry. Additionally, the LAMP assay achieved 10-fold higher sensitivity than an existing polymerase chain reaction (PCR) method. The LAMP assay was applied to swab samples collected from poultry farms and compared with PCR. The positive detection rate was 20.2% (37/183) by LAMP and 13.1% (24/183) by PCR. The LAMP assay could provide a cost-effective, quick, and sensitive method for the detection of M. gallisepticum.</description><identifier>ISSN: 1040-6387</identifier><identifier>EISSN: 1943-4936</identifier><identifier>DOI: 10.1177/1040638715584155</identifier><identifier>PMID: 26038479</identifier><language>eng</language><publisher>Los Angeles, CA: SAGE Publications</publisher><subject>Animals ; DNA Primers ; Mycoplasma gallisepticum ; Mycoplasma gallisepticum - genetics ; Mycoplasma gallisepticum - isolation & purification ; Mycoplasma Infections - diagnosis ; Mycoplasma Infections - veterinary ; Nucleic Acid Amplification Techniques - methods ; Nucleic Acid Amplification Techniques - veterinary ; Polymerase Chain Reaction - methods ; Polymerase Chain Reaction - veterinary ; Poultry ; Poultry Diseases - diagnosis ; Poultry Diseases - microbiology ; Predictive Value of Tests ; Pyruvate Dehydrogenase Complex - genetics ; Sensitivity and Specificity</subject><ispartof>Journal of veterinary diagnostic investigation, 2015-05, Vol.27 (3), p.260-267</ispartof><rights>2015 The Author(s)</rights><rights>2015 The Author(s).</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-d21df332ba0ebe79dcfc41edbebef88b858cb0252bf5883d4845d7ff99fec73e3</citedby><cites>FETCH-LOGICAL-c412t-d21df332ba0ebe79dcfc41edbebef88b858cb0252bf5883d4845d7ff99fec73e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925,79364</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26038479$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Fanqing</creatorcontrib><creatorcontrib>Bao, Shijun</creatorcontrib><creatorcontrib>Yu, Shengqing</creatorcontrib><creatorcontrib>Cheng, Jinghua</creatorcontrib><creatorcontrib>Tan, Lei</creatorcontrib><creatorcontrib>Qiu, Xvsheng</creatorcontrib><creatorcontrib>Song, Cuiping</creatorcontrib><creatorcontrib>Dai, Yabin</creatorcontrib><creatorcontrib>Fei, Rongmei</creatorcontrib><creatorcontrib>Ding, Chan</creatorcontrib><title>Development of a loop-mediated isothermal amplification targeting a gene within the pyruvate dehydrogenase complex, the pdhA gene, for rapid detection of Mycoplasma gallisepticum</title><title>Journal of veterinary diagnostic investigation</title><addtitle>J Vet Diagn Invest</addtitle><description>Mycoplasma gallisepticum infections impose a significant economic burden on the poultry industry. In the current study, a loop-mediated isothermal amplification (LAMP) assay was developed and optimized to detect M. gallisepticum based on a gene within the pyruvate dehydrogenase complex, the pdhA gene, which codes for the major subunit (E1α) in the complex. The reaction conditions were optimized, and the specificity was confirmed by successful amplification of several M. gallisepticum strains, while no amplification was detected with 20 other major bacterial and viral pathogens of poultry. Additionally, the LAMP assay achieved 10-fold higher sensitivity than an existing polymerase chain reaction (PCR) method. The LAMP assay was applied to swab samples collected from poultry farms and compared with PCR. The positive detection rate was 20.2% (37/183) by LAMP and 13.1% (24/183) by PCR. The LAMP assay could provide a cost-effective, quick, and sensitive method for the detection of M. gallisepticum.</description><subject>Animals</subject><subject>DNA Primers</subject><subject>Mycoplasma gallisepticum</subject><subject>Mycoplasma gallisepticum - genetics</subject><subject>Mycoplasma gallisepticum - isolation & purification</subject><subject>Mycoplasma Infections - diagnosis</subject><subject>Mycoplasma Infections - veterinary</subject><subject>Nucleic Acid Amplification Techniques - methods</subject><subject>Nucleic Acid Amplification Techniques - veterinary</subject><subject>Polymerase Chain Reaction - methods</subject><subject>Polymerase Chain Reaction - veterinary</subject><subject>Poultry</subject><subject>Poultry Diseases - diagnosis</subject><subject>Poultry Diseases - microbiology</subject><subject>Predictive Value of Tests</subject><subject>Pyruvate Dehydrogenase Complex - genetics</subject><subject>Sensitivity and Specificity</subject><issn>1040-6387</issn><issn>1943-4936</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNqFkUtv1TAUhCMEog_Ys0JesmjAjzhxllWBglTEBtaRYx_fuHLiYDuF-7f4hZzbW1ggIRZ-Zb4ZW5mqesHoa8a67g2jDW2F6piUqsHpUXXK-kbUTS_ax7hHuT7oJ9VZzreUSi479rQ64S0Vqun60-rnW7iDENcZlkKiI5qEGNd6But1AUt8jmWCNOtA9LwG77zRxceFFJ12UPyyQ8sOFiDffZk8fp-ArPu03aGdWJj2NkXUdQZiIibAj4sjY6fLe-MFcTGRpFdvkS9g7uPxKZ_2Jq5B5xkv0CH4DGvxZpufVU-cDhmeP6zn1df3775cfahvPl9_vLq8qU3DeKktZ9YJwUdNYYSut8ahAHbEk1NqVFKZkXLJRyeVErZRjbSdc33vwHQCxHn16pi7pvhtg1yG2WcDIegF4pYHLEAo3naK_x9tVUtxyANKj6hJMecEbliTn3XaD4wOh1KHv0tFy8uH9G3EYv4YfreIQH0Est7BcBu3tOCP-XfgLw2krqA</recordid><startdate>20150501</startdate><enddate>20150501</enddate><creator>Zhang, Fanqing</creator><creator>Bao, Shijun</creator><creator>Yu, Shengqing</creator><creator>Cheng, Jinghua</creator><creator>Tan, Lei</creator><creator>Qiu, Xvsheng</creator><creator>Song, Cuiping</creator><creator>Dai, Yabin</creator><creator>Fei, Rongmei</creator><creator>Ding, Chan</creator><general>SAGE Publications</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>20150501</creationdate><title>Development of a loop-mediated isothermal amplification targeting a gene within the pyruvate dehydrogenase complex, the pdhA gene, for rapid detection of Mycoplasma gallisepticum</title><author>Zhang, Fanqing ; Bao, Shijun ; Yu, Shengqing ; Cheng, Jinghua ; Tan, Lei ; Qiu, Xvsheng ; Song, Cuiping ; Dai, Yabin ; Fei, Rongmei ; Ding, Chan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c412t-d21df332ba0ebe79dcfc41edbebef88b858cb0252bf5883d4845d7ff99fec73e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Animals</topic><topic>DNA Primers</topic><topic>Mycoplasma gallisepticum</topic><topic>Mycoplasma gallisepticum - genetics</topic><topic>Mycoplasma gallisepticum - isolation & purification</topic><topic>Mycoplasma Infections - diagnosis</topic><topic>Mycoplasma Infections - veterinary</topic><topic>Nucleic Acid Amplification Techniques - methods</topic><topic>Nucleic Acid Amplification Techniques - veterinary</topic><topic>Polymerase Chain Reaction - methods</topic><topic>Polymerase Chain Reaction - veterinary</topic><topic>Poultry</topic><topic>Poultry Diseases - diagnosis</topic><topic>Poultry Diseases - microbiology</topic><topic>Predictive Value of Tests</topic><topic>Pyruvate Dehydrogenase Complex - genetics</topic><topic>Sensitivity and Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Fanqing</creatorcontrib><creatorcontrib>Bao, Shijun</creatorcontrib><creatorcontrib>Yu, Shengqing</creatorcontrib><creatorcontrib>Cheng, Jinghua</creatorcontrib><creatorcontrib>Tan, Lei</creatorcontrib><creatorcontrib>Qiu, Xvsheng</creatorcontrib><creatorcontrib>Song, Cuiping</creatorcontrib><creatorcontrib>Dai, Yabin</creatorcontrib><creatorcontrib>Fei, Rongmei</creatorcontrib><creatorcontrib>Ding, Chan</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>Journal of veterinary diagnostic investigation</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Fanqing</au><au>Bao, Shijun</au><au>Yu, Shengqing</au><au>Cheng, Jinghua</au><au>Tan, Lei</au><au>Qiu, Xvsheng</au><au>Song, Cuiping</au><au>Dai, Yabin</au><au>Fei, Rongmei</au><au>Ding, Chan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Development of a loop-mediated isothermal amplification targeting a gene within the pyruvate dehydrogenase complex, the pdhA gene, for rapid detection of Mycoplasma gallisepticum</atitle><jtitle>Journal of veterinary diagnostic investigation</jtitle><addtitle>J Vet Diagn Invest</addtitle><date>2015-05-01</date><risdate>2015</risdate><volume>27</volume><issue>3</issue><spage>260</spage><epage>267</epage><pages>260-267</pages><issn>1040-6387</issn><eissn>1943-4936</eissn><abstract>Mycoplasma gallisepticum infections impose a significant economic burden on the poultry industry. In the current study, a loop-mediated isothermal amplification (LAMP) assay was developed and optimized to detect M. gallisepticum based on a gene within the pyruvate dehydrogenase complex, the pdhA gene, which codes for the major subunit (E1α) in the complex. The reaction conditions were optimized, and the specificity was confirmed by successful amplification of several M. gallisepticum strains, while no amplification was detected with 20 other major bacterial and viral pathogens of poultry. Additionally, the LAMP assay achieved 10-fold higher sensitivity than an existing polymerase chain reaction (PCR) method. The LAMP assay was applied to swab samples collected from poultry farms and compared with PCR. The positive detection rate was 20.2% (37/183) by LAMP and 13.1% (24/183) by PCR. The LAMP assay could provide a cost-effective, quick, and sensitive method for the detection of M. gallisepticum.</abstract><cop>Los Angeles, CA</cop><pub>SAGE Publications</pub><pmid>26038479</pmid><doi>10.1177/1040638715584155</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Animals DNA Primers Mycoplasma gallisepticum Mycoplasma gallisepticum - genetics Mycoplasma gallisepticum - isolation & purification Mycoplasma Infections - diagnosis Mycoplasma Infections - veterinary Nucleic Acid Amplification Techniques - methods Nucleic Acid Amplification Techniques - veterinary Polymerase Chain Reaction - methods Polymerase Chain Reaction - veterinary Poultry Poultry Diseases - diagnosis Poultry Diseases - microbiology Predictive Value of Tests Pyruvate Dehydrogenase Complex - genetics Sensitivity and Specificity |
title | Development of a loop-mediated isothermal amplification targeting a gene within the pyruvate dehydrogenase complex, the pdhA gene, for rapid detection of Mycoplasma gallisepticum |
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