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Microbial community changes in biological phosphate-removal systems on altering sludge phosphorus content

Institute of Environmental Engineering, National Central University, Chungli 32054, Taiwan 1 Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA 2 Department of Urban Engineering, University of Tokyo, Tokyo 113, Japan 3 National Institute of Bioscience and Human Tech...

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Published in:Microbiology (Society for General Microbiology) 2000-05, Vol.146 (5), p.1099-1107
Main Authors: Liu, Wen-Tso, Linning, Katrina D, Nakamura, Kazunori, Mino, Takashi, Matsuo, Tomonori, Forney, Larry J
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container_title Microbiology (Society for General Microbiology)
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creator Liu, Wen-Tso
Linning, Katrina D
Nakamura, Kazunori
Mino, Takashi
Matsuo, Tomonori
Forney, Larry J
description Institute of Environmental Engineering, National Central University, Chungli 32054, Taiwan 1 Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA 2 Department of Urban Engineering, University of Tokyo, Tokyo 113, Japan 3 National Institute of Bioscience and Human Technology, Agency of Industrial Science and Technology, 1-1 Tsukuba, Ibaraki, 305-8566 Japan 4 Center for Ecological and Evolutionary Studies, University of Groningen, The Netherlands 5 Author for correspondence: Wen-Tso Liu. Tel: +886 3422 7151 ext 4683. Fax: +886 3426 9401. e-mail: liuwt{at}cc.ncu.edu.tw Biomarkers (respiratory quinones and cellular fatty acids) and denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA genes were used to characterize the microbial community structure of lab-scale enhanced biological phosphate-removal (EBPR) systems in response to altering sludge phosphorus (P) content. All the data suggest that the microbial community structures of sludge samples with a P content between 8 and 12·3% (sludge dry weight) (i.e. good EBPR activity) were very similar, but differed from those with 2% P content (i.e. no EBPR activity). For all samples analysed, ubiquinones Q-8 and Q-10, menaquinone MK-8(H 4 ), and fatty acids C 16:0 , C 16:1 9 c and C 18:1 11 c were the major components. The dominance of Q-8, Q-10 and MK-8(H 4 ) suggested that large numbers of organisms belonging to the ß and subclasses of the Proteobacteria and the Actinobacteria from the high G+C Gram-positive bacteria, respectively, were present. DGGE analysis revealed at least 7–9 predominant DNA bands and numerous other fragments in each sample. Five major DGGE fragments from each of the 2% and 12% P-containing sludge samples, respectively, were successfully isolated and sequenced. Phylogenetic analysis of the sequences indicated that both 2% and 12% P-containing sludge samples shared three common phylotypes that were separately affiliated with a novel bacterial group from the subclass of the Proteobacteria , two MK-8(H 4 )-containing actinobacteria previously isolated from the 2% P-containing sludge, and a Caulobacter spp. in the subclass of the Proteobacteria . The phylogenetic analysis also revealed phylotypes unique to both sludge samples. Changes in sludge P content therefore had an effect on the composition and abundance of the predominant microbial populations, though specific phylotypes could not be unequivocally associated with EBPR. Keywords: Activated
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Tel: +886 3422 7151 ext 4683. Fax: +886 3426 9401. e-mail: liuwt{at}cc.ncu.edu.tw Biomarkers (respiratory quinones and cellular fatty acids) and denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA genes were used to characterize the microbial community structure of lab-scale enhanced biological phosphate-removal (EBPR) systems in response to altering sludge phosphorus (P) content. All the data suggest that the microbial community structures of sludge samples with a P content between 8 and 12·3% (sludge dry weight) (i.e. good EBPR activity) were very similar, but differed from those with 2% P content (i.e. no EBPR activity). For all samples analysed, ubiquinones Q-8 and Q-10, menaquinone MK-8(H 4 ), and fatty acids C 16:0 , C 16:1 9 c and C 18:1 11 c were the major components. The dominance of Q-8, Q-10 and MK-8(H 4 ) suggested that large numbers of organisms belonging to the ß and subclasses of the Proteobacteria and the Actinobacteria from the high G+C Gram-positive bacteria, respectively, were present. DGGE analysis revealed at least 7–9 predominant DNA bands and numerous other fragments in each sample. Five major DGGE fragments from each of the 2% and 12% P-containing sludge samples, respectively, were successfully isolated and sequenced. Phylogenetic analysis of the sequences indicated that both 2% and 12% P-containing sludge samples shared three common phylotypes that were separately affiliated with a novel bacterial group from the subclass of the Proteobacteria , two MK-8(H 4 )-containing actinobacteria previously isolated from the 2% P-containing sludge, and a Caulobacter spp. in the subclass of the Proteobacteria . The phylogenetic analysis also revealed phylotypes unique to both sludge samples. Changes in sludge P content therefore had an effect on the composition and abundance of the predominant microbial populations, though specific phylotypes could not be unequivocally associated with EBPR. Keywords: Activated sludge, biological phosphate removal, biomarker, DGGE, 16S rDNA Abbreviations: DGGE, denaturing gradient gel electrophoresis; EBPR, enhanced biological phosphate removal; PHA, polyhydroxyalkanoate The GenBank/EMBL/DDBJ accession numbers for the sequences obtained in this report are AF109792 (strain Lpha5), AF109793 (strain Lpha7) and AF124650 to AF124659 .</description><identifier>ISSN: 1350-0872</identifier><identifier>EISSN: 1465-2080</identifier><identifier>DOI: 10.1099/00221287-146-5-1099</identifier><identifier>PMID: 10832637</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Actinobacteria ; Actinobacteria - isolation &amp; purification ; Actinobacteria - metabolism ; Bacteria - genetics ; Bacteria - isolation &amp; purification ; Bacteria - metabolism ; Biodegradation, Environmental ; Biological and medical sciences ; Biological treatment of sewage sludges and wastes ; Biomarkers - analysis ; Biotechnology ; Caulobacter - isolation &amp; purification ; Caulobacter - metabolism ; DNA, Bacterial - analysis ; DNA, Ribosomal - analysis ; Environment and pollution ; Environmental Microbiology ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Industrial applications and implications. Economical aspects ; Molecular Sequence Data ; Phosphates - analysis ; Phosphates - metabolism ; Phosphorus - analysis ; Phosphorus - metabolism ; Phylogeny ; Polymerase Chain Reaction ; Proteobacteria ; Proteobacteria - isolation &amp; purification ; Proteobacteria - metabolism ; Quinones - analysis ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Sewage - analysis ; Sewage - microbiology ; ubiquinone</subject><ispartof>Microbiology (Society for General Microbiology), 2000-05, Vol.146 (5), p.1099-1107</ispartof><rights>2000 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=1415619$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10832637$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Wen-Tso</creatorcontrib><creatorcontrib>Linning, Katrina D</creatorcontrib><creatorcontrib>Nakamura, Kazunori</creatorcontrib><creatorcontrib>Mino, Takashi</creatorcontrib><creatorcontrib>Matsuo, Tomonori</creatorcontrib><creatorcontrib>Forney, Larry J</creatorcontrib><title>Microbial community changes in biological phosphate-removal systems on altering sludge phosphorus content</title><title>Microbiology (Society for General Microbiology)</title><addtitle>Microbiology</addtitle><description>Institute of Environmental Engineering, National Central University, Chungli 32054, Taiwan 1 Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA 2 Department of Urban Engineering, University of Tokyo, Tokyo 113, Japan 3 National Institute of Bioscience and Human Technology, Agency of Industrial Science and Technology, 1-1 Tsukuba, Ibaraki, 305-8566 Japan 4 Center for Ecological and Evolutionary Studies, University of Groningen, The Netherlands 5 Author for correspondence: Wen-Tso Liu. Tel: +886 3422 7151 ext 4683. Fax: +886 3426 9401. e-mail: liuwt{at}cc.ncu.edu.tw Biomarkers (respiratory quinones and cellular fatty acids) and denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA genes were used to characterize the microbial community structure of lab-scale enhanced biological phosphate-removal (EBPR) systems in response to altering sludge phosphorus (P) content. All the data suggest that the microbial community structures of sludge samples with a P content between 8 and 12·3% (sludge dry weight) (i.e. good EBPR activity) were very similar, but differed from those with 2% P content (i.e. no EBPR activity). For all samples analysed, ubiquinones Q-8 and Q-10, menaquinone MK-8(H 4 ), and fatty acids C 16:0 , C 16:1 9 c and C 18:1 11 c were the major components. The dominance of Q-8, Q-10 and MK-8(H 4 ) suggested that large numbers of organisms belonging to the ß and subclasses of the Proteobacteria and the Actinobacteria from the high G+C Gram-positive bacteria, respectively, were present. DGGE analysis revealed at least 7–9 predominant DNA bands and numerous other fragments in each sample. Five major DGGE fragments from each of the 2% and 12% P-containing sludge samples, respectively, were successfully isolated and sequenced. Phylogenetic analysis of the sequences indicated that both 2% and 12% P-containing sludge samples shared three common phylotypes that were separately affiliated with a novel bacterial group from the subclass of the Proteobacteria , two MK-8(H 4 )-containing actinobacteria previously isolated from the 2% P-containing sludge, and a Caulobacter spp. in the subclass of the Proteobacteria . The phylogenetic analysis also revealed phylotypes unique to both sludge samples. Changes in sludge P content therefore had an effect on the composition and abundance of the predominant microbial populations, though specific phylotypes could not be unequivocally associated with EBPR. Keywords: Activated sludge, biological phosphate removal, biomarker, DGGE, 16S rDNA Abbreviations: DGGE, denaturing gradient gel electrophoresis; EBPR, enhanced biological phosphate removal; PHA, polyhydroxyalkanoate The GenBank/EMBL/DDBJ accession numbers for the sequences obtained in this report are AF109792 (strain Lpha5), AF109793 (strain Lpha7) and AF124650 to AF124659 .</description><subject>Actinobacteria</subject><subject>Actinobacteria - isolation &amp; purification</subject><subject>Actinobacteria - metabolism</subject><subject>Bacteria - genetics</subject><subject>Bacteria - isolation &amp; purification</subject><subject>Bacteria - metabolism</subject><subject>Biodegradation, Environmental</subject><subject>Biological and medical sciences</subject><subject>Biological treatment of sewage sludges and wastes</subject><subject>Biomarkers - analysis</subject><subject>Biotechnology</subject><subject>Caulobacter - isolation &amp; purification</subject><subject>Caulobacter - metabolism</subject><subject>DNA, Bacterial - analysis</subject><subject>DNA, Ribosomal - analysis</subject><subject>Environment and pollution</subject><subject>Environmental Microbiology</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. 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Economical aspects</subject><subject>Molecular Sequence Data</subject><subject>Phosphates - analysis</subject><subject>Phosphates - metabolism</subject><subject>Phosphorus - analysis</subject><subject>Phosphorus - metabolism</subject><subject>Phylogeny</subject><subject>Polymerase Chain Reaction</subject><subject>Proteobacteria</subject><subject>Proteobacteria - isolation &amp; purification</subject><subject>Proteobacteria - metabolism</subject><subject>Quinones - analysis</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sewage - analysis</subject><subject>Sewage - microbiology</subject><subject>ubiquinone</subject><issn>1350-0872</issn><issn>1465-2080</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><recordid>eNpFkUtL9TAQhoMo3n-B8NGFCC6iubS5LEW8geJG1yVNp20-2uSYtMr590bOEVcz887DDPMOQmeUXFGi9TUhjFGmJKalwBX-0XbQYS4qzIgiuznnFcFESXaAjlL6T0huErqPDihRnAkuD5F7cTaGxpmxsGGaFu_mdWEH43tIhfNF48IYemdzfzWEtBrMDDjCFD6zktZphikVwRdmnCE63xdpXNoetnCIS8pz_Qx-PkF7nRkTnG7jMXq_v3u7fcTPrw9PtzfPeOCEzrhrKslAiVJDWQmtpBDStkpzbTpiua00yFIb1uXrrW7aljUlKMu56IxmEvgxutjMXcXwsUCa68klC-NoPIQl1VQqJpgQGfy3BZdmgrZeRTeZuK5_zcnA-RYwKRvQReOtS39cSStBdcYuN9jg-uHLRah78NPG1pCX2-x6XdU__-HfyKyELg</recordid><startdate>20000501</startdate><enddate>20000501</enddate><creator>Liu, Wen-Tso</creator><creator>Linning, Katrina D</creator><creator>Nakamura, Kazunori</creator><creator>Mino, Takashi</creator><creator>Matsuo, Tomonori</creator><creator>Forney, Larry J</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope></search><sort><creationdate>20000501</creationdate><title>Microbial community changes in biological phosphate-removal systems on altering sludge phosphorus content</title><author>Liu, Wen-Tso ; Linning, Katrina D ; Nakamura, Kazunori ; Mino, Takashi ; Matsuo, Tomonori ; Forney, Larry J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-h301t-fb572e8649e456987667cd8939af0c3c59e749a2f022c9bdd2b4e8c336fa927e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>Actinobacteria</topic><topic>Actinobacteria - isolation &amp; purification</topic><topic>Actinobacteria - metabolism</topic><topic>Bacteria - genetics</topic><topic>Bacteria - isolation &amp; purification</topic><topic>Bacteria - metabolism</topic><topic>Biodegradation, Environmental</topic><topic>Biological and medical sciences</topic><topic>Biological treatment of sewage sludges and wastes</topic><topic>Biomarkers - analysis</topic><topic>Biotechnology</topic><topic>Caulobacter - isolation &amp; purification</topic><topic>Caulobacter - metabolism</topic><topic>DNA, Bacterial - analysis</topic><topic>DNA, Ribosomal - analysis</topic><topic>Environment and pollution</topic><topic>Environmental Microbiology</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Industrial applications and implications. Economical aspects</topic><topic>Molecular Sequence Data</topic><topic>Phosphates - analysis</topic><topic>Phosphates - metabolism</topic><topic>Phosphorus - analysis</topic><topic>Phosphorus - metabolism</topic><topic>Phylogeny</topic><topic>Polymerase Chain Reaction</topic><topic>Proteobacteria</topic><topic>Proteobacteria - isolation &amp; purification</topic><topic>Proteobacteria - metabolism</topic><topic>Quinones - analysis</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sewage - analysis</topic><topic>Sewage - microbiology</topic><topic>ubiquinone</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Wen-Tso</creatorcontrib><creatorcontrib>Linning, Katrina D</creatorcontrib><creatorcontrib>Nakamura, Kazunori</creatorcontrib><creatorcontrib>Mino, Takashi</creatorcontrib><creatorcontrib>Matsuo, Tomonori</creatorcontrib><creatorcontrib>Forney, Larry J</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Microbiology (Society for General Microbiology)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Wen-Tso</au><au>Linning, Katrina D</au><au>Nakamura, Kazunori</au><au>Mino, Takashi</au><au>Matsuo, Tomonori</au><au>Forney, Larry J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Microbial community changes in biological phosphate-removal systems on altering sludge phosphorus content</atitle><jtitle>Microbiology (Society for General Microbiology)</jtitle><addtitle>Microbiology</addtitle><date>2000-05-01</date><risdate>2000</risdate><volume>146</volume><issue>5</issue><spage>1099</spage><epage>1107</epage><pages>1099-1107</pages><issn>1350-0872</issn><eissn>1465-2080</eissn><abstract>Institute of Environmental Engineering, National Central University, Chungli 32054, Taiwan 1 Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA 2 Department of Urban Engineering, University of Tokyo, Tokyo 113, Japan 3 National Institute of Bioscience and Human Technology, Agency of Industrial Science and Technology, 1-1 Tsukuba, Ibaraki, 305-8566 Japan 4 Center for Ecological and Evolutionary Studies, University of Groningen, The Netherlands 5 Author for correspondence: Wen-Tso Liu. Tel: +886 3422 7151 ext 4683. Fax: +886 3426 9401. e-mail: liuwt{at}cc.ncu.edu.tw Biomarkers (respiratory quinones and cellular fatty acids) and denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA genes were used to characterize the microbial community structure of lab-scale enhanced biological phosphate-removal (EBPR) systems in response to altering sludge phosphorus (P) content. All the data suggest that the microbial community structures of sludge samples with a P content between 8 and 12·3% (sludge dry weight) (i.e. good EBPR activity) were very similar, but differed from those with 2% P content (i.e. no EBPR activity). For all samples analysed, ubiquinones Q-8 and Q-10, menaquinone MK-8(H 4 ), and fatty acids C 16:0 , C 16:1 9 c and C 18:1 11 c were the major components. The dominance of Q-8, Q-10 and MK-8(H 4 ) suggested that large numbers of organisms belonging to the ß and subclasses of the Proteobacteria and the Actinobacteria from the high G+C Gram-positive bacteria, respectively, were present. DGGE analysis revealed at least 7–9 predominant DNA bands and numerous other fragments in each sample. Five major DGGE fragments from each of the 2% and 12% P-containing sludge samples, respectively, were successfully isolated and sequenced. Phylogenetic analysis of the sequences indicated that both 2% and 12% P-containing sludge samples shared three common phylotypes that were separately affiliated with a novel bacterial group from the subclass of the Proteobacteria , two MK-8(H 4 )-containing actinobacteria previously isolated from the 2% P-containing sludge, and a Caulobacter spp. in the subclass of the Proteobacteria . The phylogenetic analysis also revealed phylotypes unique to both sludge samples. Changes in sludge P content therefore had an effect on the composition and abundance of the predominant microbial populations, though specific phylotypes could not be unequivocally associated with EBPR. Keywords: Activated sludge, biological phosphate removal, biomarker, DGGE, 16S rDNA Abbreviations: DGGE, denaturing gradient gel electrophoresis; EBPR, enhanced biological phosphate removal; PHA, polyhydroxyalkanoate The GenBank/EMBL/DDBJ accession numbers for the sequences obtained in this report are AF109792 (strain Lpha5), AF109793 (strain Lpha7) and AF124650 to AF124659 .</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>10832637</pmid><doi>10.1099/00221287-146-5-1099</doi><tpages>9</tpages></addata></record>
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identifier ISSN: 1350-0872
ispartof Microbiology (Society for General Microbiology), 2000-05, Vol.146 (5), p.1099-1107
issn 1350-0872
1465-2080
language eng
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source Alma/SFX Local Collection
subjects Actinobacteria
Actinobacteria - isolation & purification
Actinobacteria - metabolism
Bacteria - genetics
Bacteria - isolation & purification
Bacteria - metabolism
Biodegradation, Environmental
Biological and medical sciences
Biological treatment of sewage sludges and wastes
Biomarkers - analysis
Biotechnology
Caulobacter - isolation & purification
Caulobacter - metabolism
DNA, Bacterial - analysis
DNA, Ribosomal - analysis
Environment and pollution
Environmental Microbiology
Fatty Acids - analysis
Fundamental and applied biological sciences. Psychology
Industrial applications and implications. Economical aspects
Molecular Sequence Data
Phosphates - analysis
Phosphates - metabolism
Phosphorus - analysis
Phosphorus - metabolism
Phylogeny
Polymerase Chain Reaction
Proteobacteria
Proteobacteria - isolation & purification
Proteobacteria - metabolism
Quinones - analysis
RNA, Ribosomal, 16S - genetics
Sequence Analysis, DNA
Sewage - analysis
Sewage - microbiology
ubiquinone
title Microbial community changes in biological phosphate-removal systems on altering sludge phosphorus content
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