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A Novel Heme Protein, the Cu,Zn-Superoxide Dismutase from Haemophilus ducreyi
Haemophilus ducreyi, the causative agent of the genital ulcerative disease known as chancroid, is unable to synthesize heme, which it acquires from humans, its only known host. Here we provide evidence that the periplasmic Cu,Zn-superoxide dismutase from this organism is a heme-binding protein, unli...
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Published in: | The Journal of biological chemistry 2001-08, Vol.276 (32), p.30326-30334 |
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description | Haemophilus ducreyi, the causative agent of the genital ulcerative disease known as chancroid, is unable to synthesize heme, which it acquires from humans, its only known host. Here we provide evidence that the periplasmic Cu,Zn-superoxide dismutase from this organism is a heme-binding protein, unlike all the other known Cu,Zn-superoxide dismutases from bacterial and eukaryotic species. When the H. ducreyi enzyme was expressed inEscherichia coli cells grown in standard LB medium, it contained only limited amounts of heme covalently bound to the polypeptide but was able efficiently to bind exogenously added hemin. Resonance Raman and electronic spectra at neutral pH indicate thatH. ducreyi Cu,Zn-superoxide dismutase contains a 6-coordinated low spin heme, with two histidines as the most likely axial ligands. By site-directed mutagenesis and analysis of a structural model of the enzyme, we identified as a putative axial ligand a histidine residue (His-64) that is present only in theH. ducreyi enzyme and that was located at the bottom of the dimer interface. The introduction of a histidine residue in the corresponding position of the Cu,Zn-superoxide dismutase fromHaemophilus parainfluenzae was not sufficient to confer the ability to bind heme, indicating that other residues neighboring His-64 are involved in the formation of the heme-binding pocket. Our results suggest that periplasmic Cu,Zn-superoxide dismutase plays a role in heme metabolism of H. ducreyi and provide further evidence for the structural flexibility of bacterial enzymes of this class. |
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Simon ; Indiani, Chiara ; Smulevich, Giulietta ; Desideri, Alessandro ; Rotilio, Giuseppe ; Battistoni, Andrea</creator><creatorcontrib>Pacello, Francesca ; Langford, Paul R. ; Kroll, J. Simon ; Indiani, Chiara ; Smulevich, Giulietta ; Desideri, Alessandro ; Rotilio, Giuseppe ; Battistoni, Andrea</creatorcontrib><description>Haemophilus ducreyi, the causative agent of the genital ulcerative disease known as chancroid, is unable to synthesize heme, which it acquires from humans, its only known host. Here we provide evidence that the periplasmic Cu,Zn-superoxide dismutase from this organism is a heme-binding protein, unlike all the other known Cu,Zn-superoxide dismutases from bacterial and eukaryotic species. When the H. ducreyi enzyme was expressed inEscherichia coli cells grown in standard LB medium, it contained only limited amounts of heme covalently bound to the polypeptide but was able efficiently to bind exogenously added hemin. Resonance Raman and electronic spectra at neutral pH indicate thatH. ducreyi Cu,Zn-superoxide dismutase contains a 6-coordinated low spin heme, with two histidines as the most likely axial ligands. By site-directed mutagenesis and analysis of a structural model of the enzyme, we identified as a putative axial ligand a histidine residue (His-64) that is present only in theH. ducreyi enzyme and that was located at the bottom of the dimer interface. The introduction of a histidine residue in the corresponding position of the Cu,Zn-superoxide dismutase fromHaemophilus parainfluenzae was not sufficient to confer the ability to bind heme, indicating that other residues neighboring His-64 are involved in the formation of the heme-binding pocket. Our results suggest that periplasmic Cu,Zn-superoxide dismutase plays a role in heme metabolism of H. ducreyi and provide further evidence for the structural flexibility of bacterial enzymes of this class.</description><identifier>ISSN: 0021-9258</identifier><identifier>EISSN: 1083-351X</identifier><identifier>DOI: 10.1074/jbc.M010488200</identifier><identifier>PMID: 11369755</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Amino Acid Sequence ; chancroid ; Dimerization ; Electrophoresis, Polyacrylamide Gel ; Escherichia coli ; Escherichia coli - metabolism ; Haemophilus ducreyi ; Haemophilus ducreyi - enzymology ; Heme - chemistry ; heme-binding protein ; Hemin - pharmacology ; Hydrogen-Ion Concentration ; Ligands ; Models, Molecular ; Mutagenesis, Site-Directed ; Plasmids - metabolism ; Protein Binding ; Recombinant Proteins - metabolism ; Sequence Homology, Amino Acid ; Software ; Spectrophotometry ; Spectrum Analysis, Raman ; Superoxide Dismutase - chemistry ; Superoxide Dismutase - isolation & purification ; Superoxide Dismutase - metabolism</subject><ispartof>The Journal of biological chemistry, 2001-08, Vol.276 (32), p.30326-30334</ispartof><rights>2001 © 2001 ASBMB. Currently published by Elsevier Inc; originally published by American Society for Biochemistry and Molecular Biology.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c440t-a49c66af6a4003bf16393244d8e125a8872dac9121b7f0d7bb00a65f84d18b793</citedby><cites>FETCH-LOGICAL-c440t-a49c66af6a4003bf16393244d8e125a8872dac9121b7f0d7bb00a65f84d18b793</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0021925820897439$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,3549,27924,27925,45780</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11369755$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Pacello, Francesca</creatorcontrib><creatorcontrib>Langford, Paul R.</creatorcontrib><creatorcontrib>Kroll, J. Simon</creatorcontrib><creatorcontrib>Indiani, Chiara</creatorcontrib><creatorcontrib>Smulevich, Giulietta</creatorcontrib><creatorcontrib>Desideri, Alessandro</creatorcontrib><creatorcontrib>Rotilio, Giuseppe</creatorcontrib><creatorcontrib>Battistoni, Andrea</creatorcontrib><title>A Novel Heme Protein, the Cu,Zn-Superoxide Dismutase from Haemophilus ducreyi</title><title>The Journal of biological chemistry</title><addtitle>J Biol Chem</addtitle><description>Haemophilus ducreyi, the causative agent of the genital ulcerative disease known as chancroid, is unable to synthesize heme, which it acquires from humans, its only known host. Here we provide evidence that the periplasmic Cu,Zn-superoxide dismutase from this organism is a heme-binding protein, unlike all the other known Cu,Zn-superoxide dismutases from bacterial and eukaryotic species. When the H. ducreyi enzyme was expressed inEscherichia coli cells grown in standard LB medium, it contained only limited amounts of heme covalently bound to the polypeptide but was able efficiently to bind exogenously added hemin. Resonance Raman and electronic spectra at neutral pH indicate thatH. ducreyi Cu,Zn-superoxide dismutase contains a 6-coordinated low spin heme, with two histidines as the most likely axial ligands. By site-directed mutagenesis and analysis of a structural model of the enzyme, we identified as a putative axial ligand a histidine residue (His-64) that is present only in theH. ducreyi enzyme and that was located at the bottom of the dimer interface. The introduction of a histidine residue in the corresponding position of the Cu,Zn-superoxide dismutase fromHaemophilus parainfluenzae was not sufficient to confer the ability to bind heme, indicating that other residues neighboring His-64 are involved in the formation of the heme-binding pocket. Our results suggest that periplasmic Cu,Zn-superoxide dismutase plays a role in heme metabolism of H. ducreyi and provide further evidence for the structural flexibility of bacterial enzymes of this class.</description><subject>Amino Acid Sequence</subject><subject>chancroid</subject><subject>Dimerization</subject><subject>Electrophoresis, Polyacrylamide Gel</subject><subject>Escherichia coli</subject><subject>Escherichia coli - metabolism</subject><subject>Haemophilus ducreyi</subject><subject>Haemophilus ducreyi - enzymology</subject><subject>Heme - chemistry</subject><subject>heme-binding protein</subject><subject>Hemin - pharmacology</subject><subject>Hydrogen-Ion Concentration</subject><subject>Ligands</subject><subject>Models, Molecular</subject><subject>Mutagenesis, Site-Directed</subject><subject>Plasmids - metabolism</subject><subject>Protein Binding</subject><subject>Recombinant Proteins - metabolism</subject><subject>Sequence Homology, Amino Acid</subject><subject>Software</subject><subject>Spectrophotometry</subject><subject>Spectrum Analysis, Raman</subject><subject>Superoxide Dismutase - chemistry</subject><subject>Superoxide Dismutase - isolation & purification</subject><subject>Superoxide Dismutase - metabolism</subject><issn>0021-9258</issn><issn>1083-351X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2001</creationdate><recordtype>article</recordtype><recordid>eNp1kEFv1DAQhS1ERZfClSPyAfXULDO2EzvHailspRaQAAlxsRxnQlwl68VOCv33BO1KPTGXd_ne0-hj7BXCGkGrt3eNX98CgjJGADxhKwQjC1ni96dsBSCwqEVpTtnznO9gOVXjM3aKKKtal-WK3V7yj_GeBr6lkfjnFCcKuws-9cQ388WPXfFl3lOKf0JL_F3I4zy5TLxLceRbR2Pc92GYM29nn-ghvGAnnRsyvTzmGfv2_urrZlvcfPpwvbm8KbxSMBVO1b6qXFc5BSCbDitZS6FUawhF6YzRonW-RoGN7qDVTQPgqrIzqkXT6FqesfPD7j7FXzPlyY4hexoGt6M4Z4u6RhRaLeD6APoUc07U2X0Ko0sPFsH-E2gXgfZR4FJ4fVyem5HaR_xobAHeHIA-_Ox_h0S2CdH3NFqhKyuFlSBFtWDmgNGi4T5QstkH2nlql4qfbBvD_174Cwx5iSA</recordid><startdate>20010810</startdate><enddate>20010810</enddate><creator>Pacello, Francesca</creator><creator>Langford, Paul R.</creator><creator>Kroll, J. 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Simon ; Indiani, Chiara ; Smulevich, Giulietta ; Desideri, Alessandro ; Rotilio, Giuseppe ; Battistoni, Andrea</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c440t-a49c66af6a4003bf16393244d8e125a8872dac9121b7f0d7bb00a65f84d18b793</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2001</creationdate><topic>Amino Acid Sequence</topic><topic>chancroid</topic><topic>Dimerization</topic><topic>Electrophoresis, Polyacrylamide Gel</topic><topic>Escherichia coli</topic><topic>Escherichia coli - metabolism</topic><topic>Haemophilus ducreyi</topic><topic>Haemophilus ducreyi - enzymology</topic><topic>Heme - chemistry</topic><topic>heme-binding protein</topic><topic>Hemin - pharmacology</topic><topic>Hydrogen-Ion Concentration</topic><topic>Ligands</topic><topic>Models, Molecular</topic><topic>Mutagenesis, Site-Directed</topic><topic>Plasmids - metabolism</topic><topic>Protein Binding</topic><topic>Recombinant Proteins - metabolism</topic><topic>Sequence Homology, Amino Acid</topic><topic>Software</topic><topic>Spectrophotometry</topic><topic>Spectrum Analysis, Raman</topic><topic>Superoxide Dismutase - chemistry</topic><topic>Superoxide Dismutase - isolation & purification</topic><topic>Superoxide Dismutase - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pacello, Francesca</creatorcontrib><creatorcontrib>Langford, Paul R.</creatorcontrib><creatorcontrib>Kroll, J. 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When the H. ducreyi enzyme was expressed inEscherichia coli cells grown in standard LB medium, it contained only limited amounts of heme covalently bound to the polypeptide but was able efficiently to bind exogenously added hemin. Resonance Raman and electronic spectra at neutral pH indicate thatH. ducreyi Cu,Zn-superoxide dismutase contains a 6-coordinated low spin heme, with two histidines as the most likely axial ligands. By site-directed mutagenesis and analysis of a structural model of the enzyme, we identified as a putative axial ligand a histidine residue (His-64) that is present only in theH. ducreyi enzyme and that was located at the bottom of the dimer interface. The introduction of a histidine residue in the corresponding position of the Cu,Zn-superoxide dismutase fromHaemophilus parainfluenzae was not sufficient to confer the ability to bind heme, indicating that other residues neighboring His-64 are involved in the formation of the heme-binding pocket. 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subjects | Amino Acid Sequence chancroid Dimerization Electrophoresis, Polyacrylamide Gel Escherichia coli Escherichia coli - metabolism Haemophilus ducreyi Haemophilus ducreyi - enzymology Heme - chemistry heme-binding protein Hemin - pharmacology Hydrogen-Ion Concentration Ligands Models, Molecular Mutagenesis, Site-Directed Plasmids - metabolism Protein Binding Recombinant Proteins - metabolism Sequence Homology, Amino Acid Software Spectrophotometry Spectrum Analysis, Raman Superoxide Dismutase - chemistry Superoxide Dismutase - isolation & purification Superoxide Dismutase - metabolism |
title | A Novel Heme Protein, the Cu,Zn-Superoxide Dismutase from Haemophilus ducreyi |
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