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Current trends in protein crystallization
Proteins belong to the most complex colloidal system in terms of their physicochemical properties, size and conformational-flexibility. This complexity contributes to their great sensitivity to any external change and dictate the uncertainty of crystallization. The need of 3D models to understand th...
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Published in: | Archives of biochemistry and biophysics 2016-07, Vol.602, p.3-11 |
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description | Proteins belong to the most complex colloidal system in terms of their physicochemical properties, size and conformational-flexibility. This complexity contributes to their great sensitivity to any external change and dictate the uncertainty of crystallization. The need of 3D models to understand their functionality and interaction mechanisms with other neighbouring (macro)molecules has driven the tremendous effort put into the field of crystallography that has also permeated other fields trying to shed some light into reluctant-to-crystallize proteins. This review is aimed at revising protein crystallization from a regular-laboratory point of view. It is also devoted to highlight the latest developments and achievements to produce, identify and deliver high-quality protein crystals for XFEL, Micro-ED or neutron diffraction. The low likelihood of protein crystallization is rationalized by considering the intrinsic polypeptide nature (folded state, surface charge, etc) followed by a description of the standard crystallization methods (batch, vapour diffusion and counter-diffusion), including high throughput advances. Other methodologies aimed at determining protein features in solution (NMR, SAS, DLS) or to gather structural information from single particles such as Cryo-EM are also discussed. Finally, current approaches showing the convergence of different structural biology techniques and the cross-methodologies adaptation to tackle the most difficult problems, are presented.
Current advances in biomacromolecules crystallization, from nano crystals for XFEL and Micro-ED to large crystals for neutron diffraction, are covered with special emphasis in methodologies applicable at laboratory scale.
[Display omitted]
•The latest on production, identification and delivering protein crystals.•Biocrystallogenesis is rationalized considering the polypeptide nature.•Source of structural information: Cryo-EM, NMR, SAS, etc.•Convergence of structural biology techniques: in vivo crystallization, etc. |
doi_str_mv | 10.1016/j.abb.2015.12.010 |
format | article |
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Current advances in biomacromolecules crystallization, from nano crystals for XFEL and Micro-ED to large crystals for neutron diffraction, are covered with special emphasis in methodologies applicable at laboratory scale.
[Display omitted]
•The latest on production, identification and delivering protein crystals.•Biocrystallogenesis is rationalized considering the polypeptide nature.•Source of structural information: Cryo-EM, NMR, SAS, etc.•Convergence of structural biology techniques: in vivo crystallization, etc.</description><identifier>ISSN: 0003-9861</identifier><identifier>EISSN: 1096-0384</identifier><identifier>DOI: 10.1016/j.abb.2015.12.010</identifier><identifier>PMID: 26747744</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Batch ; Computer Simulation ; Counter-diffusion ; Crystallization - methods ; Crystallization - trends ; Crystallography - methods ; Crystallography - trends ; Models, Molecular ; Neutron ; Protein Conformation ; Protein crystallization ; Proteins - chemical synthesis ; Proteins - ultrastructure ; Vapor-diffusion ; XFEL</subject><ispartof>Archives of biochemistry and biophysics, 2016-07, Vol.602, p.3-11</ispartof><rights>2015 Elsevier Inc.</rights><rights>Copyright © 2015 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c353t-a8bca68eabb16cca19ea519b35870b7a3853dade6159ee570a84a44aad9e55b23</citedby><cites>FETCH-LOGICAL-c353t-a8bca68eabb16cca19ea519b35870b7a3853dade6159ee570a84a44aad9e55b23</cites><orcidid>0000-0002-7386-6484</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27922,27923</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26747744$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gavira, José A.</creatorcontrib><title>Current trends in protein crystallization</title><title>Archives of biochemistry and biophysics</title><addtitle>Arch Biochem Biophys</addtitle><description>Proteins belong to the most complex colloidal system in terms of their physicochemical properties, size and conformational-flexibility. This complexity contributes to their great sensitivity to any external change and dictate the uncertainty of crystallization. The need of 3D models to understand their functionality and interaction mechanisms with other neighbouring (macro)molecules has driven the tremendous effort put into the field of crystallography that has also permeated other fields trying to shed some light into reluctant-to-crystallize proteins. This review is aimed at revising protein crystallization from a regular-laboratory point of view. It is also devoted to highlight the latest developments and achievements to produce, identify and deliver high-quality protein crystals for XFEL, Micro-ED or neutron diffraction. The low likelihood of protein crystallization is rationalized by considering the intrinsic polypeptide nature (folded state, surface charge, etc) followed by a description of the standard crystallization methods (batch, vapour diffusion and counter-diffusion), including high throughput advances. Other methodologies aimed at determining protein features in solution (NMR, SAS, DLS) or to gather structural information from single particles such as Cryo-EM are also discussed. Finally, current approaches showing the convergence of different structural biology techniques and the cross-methodologies adaptation to tackle the most difficult problems, are presented.
Current advances in biomacromolecules crystallization, from nano crystals for XFEL and Micro-ED to large crystals for neutron diffraction, are covered with special emphasis in methodologies applicable at laboratory scale.
[Display omitted]
•The latest on production, identification and delivering protein crystals.•Biocrystallogenesis is rationalized considering the polypeptide nature.•Source of structural information: Cryo-EM, NMR, SAS, etc.•Convergence of structural biology techniques: in vivo crystallization, etc.</description><subject>Batch</subject><subject>Computer Simulation</subject><subject>Counter-diffusion</subject><subject>Crystallization - methods</subject><subject>Crystallization - trends</subject><subject>Crystallography - methods</subject><subject>Crystallography - trends</subject><subject>Models, Molecular</subject><subject>Neutron</subject><subject>Protein Conformation</subject><subject>Protein crystallization</subject><subject>Proteins - chemical synthesis</subject><subject>Proteins - ultrastructure</subject><subject>Vapor-diffusion</subject><subject>XFEL</subject><issn>0003-9861</issn><issn>1096-0384</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><recordid>eNp9kEtPwzAQhC0EoqXwA7igHuGQ4I0fScQJVbykSlzgbG2creQqTYrtIJVfj6sCRy47l29Gs8PYJfAcOOjbdY5NkxccVA5FzoEfsSnwWmdcVPKYTTnnIqsrDRN2FsKacwCpi1M2KXQpy1LKKbtZjN5TH-cx3TbMXT_f-iFSUut3IWLXuS-MbujP2ckKu0AXPzpj748Pb4vnbPn69LK4X2ZWKBEzrBqLuqLUDLS1CDWhgroRqip5U6KolGixJQ2qJlIlx0qilIhtTUo1hZix60Nu6vExUohm44KlrsOehjEYKOtSSVmASCgcUOuHEDytzNa7DfqdAW72C5m1ST3MfiEDhUkLJc_VT_zYbKj9c_xOkoC7A0DpyU9H3gTrqLfUOk82mnZw_8R_A6PodgU</recordid><startdate>20160715</startdate><enddate>20160715</enddate><creator>Gavira, José A.</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-7386-6484</orcidid></search><sort><creationdate>20160715</creationdate><title>Current trends in protein crystallization</title><author>Gavira, José A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c353t-a8bca68eabb16cca19ea519b35870b7a3853dade6159ee570a84a44aad9e55b23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Batch</topic><topic>Computer Simulation</topic><topic>Counter-diffusion</topic><topic>Crystallization - methods</topic><topic>Crystallization - trends</topic><topic>Crystallography - methods</topic><topic>Crystallography - trends</topic><topic>Models, Molecular</topic><topic>Neutron</topic><topic>Protein Conformation</topic><topic>Protein crystallization</topic><topic>Proteins - chemical synthesis</topic><topic>Proteins - ultrastructure</topic><topic>Vapor-diffusion</topic><topic>XFEL</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gavira, José A.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of biochemistry and biophysics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gavira, José A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Current trends in protein crystallization</atitle><jtitle>Archives of biochemistry and biophysics</jtitle><addtitle>Arch Biochem Biophys</addtitle><date>2016-07-15</date><risdate>2016</risdate><volume>602</volume><spage>3</spage><epage>11</epage><pages>3-11</pages><issn>0003-9861</issn><eissn>1096-0384</eissn><abstract>Proteins belong to the most complex colloidal system in terms of their physicochemical properties, size and conformational-flexibility. This complexity contributes to their great sensitivity to any external change and dictate the uncertainty of crystallization. The need of 3D models to understand their functionality and interaction mechanisms with other neighbouring (macro)molecules has driven the tremendous effort put into the field of crystallography that has also permeated other fields trying to shed some light into reluctant-to-crystallize proteins. This review is aimed at revising protein crystallization from a regular-laboratory point of view. It is also devoted to highlight the latest developments and achievements to produce, identify and deliver high-quality protein crystals for XFEL, Micro-ED or neutron diffraction. The low likelihood of protein crystallization is rationalized by considering the intrinsic polypeptide nature (folded state, surface charge, etc) followed by a description of the standard crystallization methods (batch, vapour diffusion and counter-diffusion), including high throughput advances. Other methodologies aimed at determining protein features in solution (NMR, SAS, DLS) or to gather structural information from single particles such as Cryo-EM are also discussed. Finally, current approaches showing the convergence of different structural biology techniques and the cross-methodologies adaptation to tackle the most difficult problems, are presented.
Current advances in biomacromolecules crystallization, from nano crystals for XFEL and Micro-ED to large crystals for neutron diffraction, are covered with special emphasis in methodologies applicable at laboratory scale.
[Display omitted]
•The latest on production, identification and delivering protein crystals.•Biocrystallogenesis is rationalized considering the polypeptide nature.•Source of structural information: Cryo-EM, NMR, SAS, etc.•Convergence of structural biology techniques: in vivo crystallization, etc.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>26747744</pmid><doi>10.1016/j.abb.2015.12.010</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-7386-6484</orcidid></addata></record> |
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subjects | Batch Computer Simulation Counter-diffusion Crystallization - methods Crystallization - trends Crystallography - methods Crystallography - trends Models, Molecular Neutron Protein Conformation Protein crystallization Proteins - chemical synthesis Proteins - ultrastructure Vapor-diffusion XFEL |
title | Current trends in protein crystallization |
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