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Mutation analysis of genes within the dynactin complex in a cohort of hereditary peripheral neuropathies
The cytoplasmic dynein–dynactin genes are attractive candidates for neurodegenerative disorders given their functional role in retrograde transport along neurons. The cytoplasmic dynein heavy chain (DYNC1H1) gene has been implicated in various neurodegenerative disorders, and dynactin 1 (DCTN1) gene...
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Published in: | Clinical genetics 2016-08, Vol.90 (2), p.127-133 |
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description | The cytoplasmic dynein–dynactin genes are attractive candidates for neurodegenerative disorders given their functional role in retrograde transport along neurons. The cytoplasmic dynein heavy chain (DYNC1H1) gene has been implicated in various neurodegenerative disorders, and dynactin 1 (DCTN1) genes have been implicated in a wide spectrum of disorders including motor neuron disease, Parkinson's disease, spinobulbar muscular atrophy and hereditary spastic paraplegia. However, the involvement of other dynactin genes with inherited peripheral neuropathies (IPN) namely, hereditary sensory neuropathy, hereditary motor neuropathy and Charcot–Marie–Tooth disease is under reported. We screened eight genes; DCTN1‐6 and ACTR1A and ACTR1B in 136 IPN patients using whole‐exome sequencing and high‐resolution melt (HRM) analysis. Eight non‐synonymous variants (including one novel variant) and three synonymous variants were identified. Four variants have been reported previously in other studies, however segregation analysis within family members excluded them from causing IPN in these families. No variants of disease significance were identified in this study suggesting the dynactin genes are unlikely to be a common cause of IPNs. However, with the ease of querying gene variants from exome data, these genes remain worthwhile candidates to assess unsolved IPN families for variants that may affect the function of the proteins. |
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The cytoplasmic dynein heavy chain (DYNC1H1) gene has been implicated in various neurodegenerative disorders, and dynactin 1 (DCTN1) genes have been implicated in a wide spectrum of disorders including motor neuron disease, Parkinson's disease, spinobulbar muscular atrophy and hereditary spastic paraplegia. However, the involvement of other dynactin genes with inherited peripheral neuropathies (IPN) namely, hereditary sensory neuropathy, hereditary motor neuropathy and Charcot–Marie–Tooth disease is under reported. We screened eight genes; DCTN1‐6 and ACTR1A and ACTR1B in 136 IPN patients using whole‐exome sequencing and high‐resolution melt (HRM) analysis. Eight non‐synonymous variants (including one novel variant) and three synonymous variants were identified. Four variants have been reported previously in other studies, however segregation analysis within family members excluded them from causing IPN in these families. No variants of disease significance were identified in this study suggesting the dynactin genes are unlikely to be a common cause of IPNs. However, with the ease of querying gene variants from exome data, these genes remain worthwhile candidates to assess unsolved IPN families for variants that may affect the function of the proteins.</description><identifier>ISSN: 0009-9163</identifier><identifier>EISSN: 1399-0004</identifier><identifier>DOI: 10.1111/cge.12712</identifier><identifier>PMID: 26662454</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>Activin Receptors, Type I - genetics ; Charcot-Marie-Tooth ; Cohort Studies ; DNA Mutational Analysis ; dynactin ; Dynactin Complex - genetics ; Exome ; Gene Expression ; Genes ; Genetic disorders ; hereditary motor neuropathies ; hereditary sensory neuropathies ; High-Throughput Nucleotide Sequencing ; Humans ; Mutation ; Neurological disorders ; Nucleic Acid Denaturation ; Pedigree ; Peripheral Nervous System Diseases - genetics ; Peripheral Nervous System Diseases - pathology ; peripheral neuropathies ; Protein Isoforms - genetics ; Protein Subunits - genetics ; Proteins</subject><ispartof>Clinical genetics, 2016-08, Vol.90 (2), p.127-133</ispartof><rights>2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd</rights><rights>2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.</rights><rights>2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4942-9cd1c6bed63bd021b6883e630e1865767b3f855aa8409b26c21849e71a84cc0f3</citedby><cites>FETCH-LOGICAL-c4942-9cd1c6bed63bd021b6883e630e1865767b3f855aa8409b26c21849e71a84cc0f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26662454$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tey, S.</creatorcontrib><creatorcontrib>Ahmad-Annuar, A.</creatorcontrib><creatorcontrib>Drew, A.P.</creatorcontrib><creatorcontrib>Shahrizaila, N.</creatorcontrib><creatorcontrib>Nicholson, G.A.</creatorcontrib><creatorcontrib>Kennerson, M.L.</creatorcontrib><title>Mutation analysis of genes within the dynactin complex in a cohort of hereditary peripheral neuropathies</title><title>Clinical genetics</title><addtitle>Clin Genet</addtitle><description>The cytoplasmic dynein–dynactin genes are attractive candidates for neurodegenerative disorders given their functional role in retrograde transport along neurons. The cytoplasmic dynein heavy chain (DYNC1H1) gene has been implicated in various neurodegenerative disorders, and dynactin 1 (DCTN1) genes have been implicated in a wide spectrum of disorders including motor neuron disease, Parkinson's disease, spinobulbar muscular atrophy and hereditary spastic paraplegia. However, the involvement of other dynactin genes with inherited peripheral neuropathies (IPN) namely, hereditary sensory neuropathy, hereditary motor neuropathy and Charcot–Marie–Tooth disease is under reported. We screened eight genes; DCTN1‐6 and ACTR1A and ACTR1B in 136 IPN patients using whole‐exome sequencing and high‐resolution melt (HRM) analysis. Eight non‐synonymous variants (including one novel variant) and three synonymous variants were identified. Four variants have been reported previously in other studies, however segregation analysis within family members excluded them from causing IPN in these families. No variants of disease significance were identified in this study suggesting the dynactin genes are unlikely to be a common cause of IPNs. However, with the ease of querying gene variants from exome data, these genes remain worthwhile candidates to assess unsolved IPN families for variants that may affect the function of the proteins.</description><subject>Activin Receptors, Type I - genetics</subject><subject>Charcot-Marie-Tooth</subject><subject>Cohort Studies</subject><subject>DNA Mutational Analysis</subject><subject>dynactin</subject><subject>Dynactin Complex - genetics</subject><subject>Exome</subject><subject>Gene Expression</subject><subject>Genes</subject><subject>Genetic disorders</subject><subject>hereditary motor neuropathies</subject><subject>hereditary sensory neuropathies</subject><subject>High-Throughput Nucleotide Sequencing</subject><subject>Humans</subject><subject>Mutation</subject><subject>Neurological disorders</subject><subject>Nucleic Acid Denaturation</subject><subject>Pedigree</subject><subject>Peripheral Nervous System Diseases - genetics</subject><subject>Peripheral Nervous System Diseases - pathology</subject><subject>peripheral neuropathies</subject><subject>Protein Isoforms - genetics</subject><subject>Protein Subunits - genetics</subject><subject>Proteins</subject><issn>0009-9163</issn><issn>1399-0004</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><recordid>eNqNkc1O3DAUha2qVZlCF32BylI37SLgvzjxsh3RoRK0LAYhsbEc54aYZuLUdgTz9hgGWFSqVG-uz9V3zuIehD5QckjzO7LXcEhZRdkrtKBcqYIQIl6jRR6qUFTyPfQuxpsseVWqt2iPSSmZKMUC9WdzMsn5EZvRDNvoIvYdvoYRIr51qXcjTj3gdjsam7KwfjMNcIfz12TR-5AeDD0EaF0yYYsnCG7K2gx4hDn4yeQUiAfoTWeGCO-f5j66-H68Xp4Up79WP5ZfTwsrlGCFsi21soFW8qYljDayrjlIToDWsqxk1fCuLktjakFUw6RltBYKKpoX1pKO76PPu9wp-D8zxKQ3LloYBjOCn6OmNclBtFL8f1BBVS0Zzeinv9AbP4d8sUeKcyZqKTL1ZUfZ4GMM0OkpuE0-iqZEPzSlc1P6sanMfnxKnJsNtC_kczUZONoBt26A7b-T9HJ1_BxZ7BwuJrh7cZjwW8sqN68vf6705dX67JtcE33O7wG9aKuN</recordid><startdate>201608</startdate><enddate>201608</enddate><creator>Tey, S.</creator><creator>Ahmad-Annuar, A.</creator><creator>Drew, A.P.</creator><creator>Shahrizaila, N.</creator><creator>Nicholson, G.A.</creator><creator>Kennerson, M.L.</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201608</creationdate><title>Mutation analysis of genes within the dynactin complex in a cohort of hereditary peripheral neuropathies</title><author>Tey, S. ; Ahmad-Annuar, A. ; Drew, A.P. ; Shahrizaila, N. ; Nicholson, G.A. ; Kennerson, M.L.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4942-9cd1c6bed63bd021b6883e630e1865767b3f855aa8409b26c21849e71a84cc0f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Activin Receptors, Type I - genetics</topic><topic>Charcot-Marie-Tooth</topic><topic>Cohort Studies</topic><topic>DNA Mutational Analysis</topic><topic>dynactin</topic><topic>Dynactin Complex - genetics</topic><topic>Exome</topic><topic>Gene Expression</topic><topic>Genes</topic><topic>Genetic disorders</topic><topic>hereditary motor neuropathies</topic><topic>hereditary sensory neuropathies</topic><topic>High-Throughput Nucleotide Sequencing</topic><topic>Humans</topic><topic>Mutation</topic><topic>Neurological disorders</topic><topic>Nucleic Acid Denaturation</topic><topic>Pedigree</topic><topic>Peripheral Nervous System Diseases - genetics</topic><topic>Peripheral Nervous System Diseases - pathology</topic><topic>peripheral neuropathies</topic><topic>Protein Isoforms - genetics</topic><topic>Protein Subunits - genetics</topic><topic>Proteins</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tey, S.</creatorcontrib><creatorcontrib>Ahmad-Annuar, A.</creatorcontrib><creatorcontrib>Drew, A.P.</creatorcontrib><creatorcontrib>Shahrizaila, N.</creatorcontrib><creatorcontrib>Nicholson, G.A.</creatorcontrib><creatorcontrib>Kennerson, M.L.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Clinical genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tey, S.</au><au>Ahmad-Annuar, A.</au><au>Drew, A.P.</au><au>Shahrizaila, N.</au><au>Nicholson, G.A.</au><au>Kennerson, M.L.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mutation analysis of genes within the dynactin complex in a cohort of hereditary peripheral neuropathies</atitle><jtitle>Clinical genetics</jtitle><addtitle>Clin Genet</addtitle><date>2016-08</date><risdate>2016</risdate><volume>90</volume><issue>2</issue><spage>127</spage><epage>133</epage><pages>127-133</pages><issn>0009-9163</issn><eissn>1399-0004</eissn><abstract>The cytoplasmic dynein–dynactin genes are attractive candidates for neurodegenerative disorders given their functional role in retrograde transport along neurons. The cytoplasmic dynein heavy chain (DYNC1H1) gene has been implicated in various neurodegenerative disorders, and dynactin 1 (DCTN1) genes have been implicated in a wide spectrum of disorders including motor neuron disease, Parkinson's disease, spinobulbar muscular atrophy and hereditary spastic paraplegia. However, the involvement of other dynactin genes with inherited peripheral neuropathies (IPN) namely, hereditary sensory neuropathy, hereditary motor neuropathy and Charcot–Marie–Tooth disease is under reported. We screened eight genes; DCTN1‐6 and ACTR1A and ACTR1B in 136 IPN patients using whole‐exome sequencing and high‐resolution melt (HRM) analysis. Eight non‐synonymous variants (including one novel variant) and three synonymous variants were identified. Four variants have been reported previously in other studies, however segregation analysis within family members excluded them from causing IPN in these families. No variants of disease significance were identified in this study suggesting the dynactin genes are unlikely to be a common cause of IPNs. However, with the ease of querying gene variants from exome data, these genes remain worthwhile candidates to assess unsolved IPN families for variants that may affect the function of the proteins.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>26662454</pmid><doi>10.1111/cge.12712</doi><tpages>7</tpages></addata></record> |
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subjects | Activin Receptors, Type I - genetics Charcot-Marie-Tooth Cohort Studies DNA Mutational Analysis dynactin Dynactin Complex - genetics Exome Gene Expression Genes Genetic disorders hereditary motor neuropathies hereditary sensory neuropathies High-Throughput Nucleotide Sequencing Humans Mutation Neurological disorders Nucleic Acid Denaturation Pedigree Peripheral Nervous System Diseases - genetics Peripheral Nervous System Diseases - pathology peripheral neuropathies Protein Isoforms - genetics Protein Subunits - genetics Proteins |
title | Mutation analysis of genes within the dynactin complex in a cohort of hereditary peripheral neuropathies |
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