Development of Quantum Chemical Method to Calculate Half Maximal Inhibitory Concentration (IC50)

• Published in: Molecular informatics 2016-05, Vol.35 (5), p.199-206
• Main Authors: Bag, Arijit, Ghorai, Pradip Kr
• Format: Article
• Language: English
• Subjects: Anti-HIV Agents - chemistry; Capsid - drug effects; Capsid inhibitor; Entropy; HIV-1; HIV-1 - drug effects; IC50; Inhibitory Concentration 50; Kinetics; Log P; Models, Chemical; Quantitative Structure-Activity Relationship
• ISSN: 1868-1743; 1868-1751
• DOI: 10.1002/minf.201501004

Till date theoretical calculation of the half maximal inhibitory concentration (IC50 ) of a compound is based on different Quantitative Structure Activity Relationship (QSAR) models which are empirical methods. By using the Cheng‐Prusoff equation it may be possible to compute IC50, but this will be computationally very expensive as it requires explicit calculation of binding free energy of an inhibitor with respective protein or enzyme. In this article, for the first time we report an ab initio method to compute IC50 of a compound based only on the inhibitor itself where the effect of the protein is reflected through a proportionality constant. By using basic enzyme inhibition kinetics and thermodynamic relations, we derive an expression of IC50 in terms of hydrophobicity, electric dipole moment (μ) and reactivity descriptor (ω) of an inhibitor. We implement this theory to compute IC50 of 15 HIV‐1 capsid inhibitors and compared them with experimental results and available other QASR based empirical results. Calculated values using our method are in very good agreement with the experimental values compared to the values calculated using other methods.