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Expression of genes encoding subunits A and B of succinate dehydrogenase in germinating maize seeds is regulated by methylation of their promoters
Succinate dehydrogenase (SDH) activity, isoenzyme pattern, and expression of two genes encoding subunit A and of three genes encoding subunit B have been investigated in the scutellum of germinating maize (Zea mays L.) seeds. Four SDH isoforms were detected electrophoretically and by ion-exchange ch...
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Published in: | Journal of plant physiology 2016-10, Vol.205, p.33-40 |
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description | Succinate dehydrogenase (SDH) activity, isoenzyme pattern, and expression of two genes encoding subunit A and of three genes encoding subunit B have been investigated in the scutellum of germinating maize (Zea mays L.) seeds. Four SDH isoforms were detected electrophoretically and by ion-exchange chromatography at the peak of activity of the glyoxylate cycle (on the 4th and 5th day of germination), while in dry seeds and on the 8th and 9th day of germination only two isoforms were present, which can be related to differential expression of the genes encoding SDH subunits. The levels of transcription of Sdh1-1, Sdh1-2, Sdh2-1, Sdh2-2 and Sdh2-3 and the intensity of methylation of their promoters have been determined. In the course of seed germination, the level of methylation of the promoters of one gene encoding subunit A (Sdh1-1) and of two genes encoding subunit B (Sdh2-1 and Sdh2-2) changed from low to the highest, which resulted in suppression of their transcription during the period when the intensity of the glyoxylate cycle was decreasing, while methylation of the promoter of Sdh2-3 did not change and expression of this gene was constitutive during germination. Methylation of the promoter of Sdh1-2 increased but less sharply as compared to Sdh1-1. It is suggested that epigenetic mechanisms of SDH expression via methylation of promoters play an important role in the regulation of transcription of Sdh1-1, Sdh2-1 and Sdh2-2 in maize seeds during germination. These genes may play a role in the provision of operation of the glyoxylate cycle, while Sdh1-2 and Sdh2-3 are involved mainly in the respiratory processes that are not connected with utilization of succinate formed in the glyoxylate cycle. |
doi_str_mv | 10.1016/j.jplph.2016.08.008 |
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Four SDH isoforms were detected electrophoretically and by ion-exchange chromatography at the peak of activity of the glyoxylate cycle (on the 4th and 5th day of germination), while in dry seeds and on the 8th and 9th day of germination only two isoforms were present, which can be related to differential expression of the genes encoding SDH subunits. The levels of transcription of Sdh1-1, Sdh1-2, Sdh2-1, Sdh2-2 and Sdh2-3 and the intensity of methylation of their promoters have been determined. In the course of seed germination, the level of methylation of the promoters of one gene encoding subunit A (Sdh1-1) and of two genes encoding subunit B (Sdh2-1 and Sdh2-2) changed from low to the highest, which resulted in suppression of their transcription during the period when the intensity of the glyoxylate cycle was decreasing, while methylation of the promoter of Sdh2-3 did not change and expression of this gene was constitutive during germination. Methylation of the promoter of Sdh1-2 increased but less sharply as compared to Sdh1-1. It is suggested that epigenetic mechanisms of SDH expression via methylation of promoters play an important role in the regulation of transcription of Sdh1-1, Sdh2-1 and Sdh2-2 in maize seeds during germination. These genes may play a role in the provision of operation of the glyoxylate cycle, while Sdh1-2 and Sdh2-3 are involved mainly in the respiratory processes that are not connected with utilization of succinate formed in the glyoxylate cycle.</description><identifier>ISSN: 0176-1617</identifier><identifier>EISSN: 1618-1328</identifier><identifier>DOI: 10.1016/j.jplph.2016.08.008</identifier><identifier>PMID: 27591393</identifier><language>eng</language><publisher>Germany: Elsevier GmbH</publisher><subject>CpG island ; CpG Islands - genetics ; DNA Methylation ; Gene expression ; Gene Expression Regulation, Plant ; Germination ; Isoenzymes ; Isozymes ; Oxidation-Reduction ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Promoter methylation ; Promoter Regions, Genetic - genetics ; Seeds - enzymology ; Seeds - genetics ; Succinate dehydrogenase ; Succinate Dehydrogenase - genetics ; Succinate Dehydrogenase - metabolism ; Zea mays ; Zea mays - enzymology ; Zea mays - genetics</subject><ispartof>Journal of plant physiology, 2016-10, Vol.205, p.33-40</ispartof><rights>2016 Elsevier GmbH</rights><rights>Copyright © 2016 Elsevier GmbH. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c359t-ce8e3d5bd37ef97c716301bbebaf70452c2b653e1fe0011b1d732f39350059073</citedby><cites>FETCH-LOGICAL-c359t-ce8e3d5bd37ef97c716301bbebaf70452c2b653e1fe0011b1d732f39350059073</cites><orcidid>0000-0002-7253-607X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27591393$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Eprintsev, Alexander T.</creatorcontrib><creatorcontrib>Fedorin, Dmitry N.</creatorcontrib><creatorcontrib>Karabutova, Lyudmila A.</creatorcontrib><creatorcontrib>Igamberdiev, Abir U.</creatorcontrib><title>Expression of genes encoding subunits A and B of succinate dehydrogenase in germinating maize seeds is regulated by methylation of their promoters</title><title>Journal of plant physiology</title><addtitle>J Plant Physiol</addtitle><description>Succinate dehydrogenase (SDH) activity, isoenzyme pattern, and expression of two genes encoding subunit A and of three genes encoding subunit B have been investigated in the scutellum of germinating maize (Zea mays L.) seeds. Four SDH isoforms were detected electrophoretically and by ion-exchange chromatography at the peak of activity of the glyoxylate cycle (on the 4th and 5th day of germination), while in dry seeds and on the 8th and 9th day of germination only two isoforms were present, which can be related to differential expression of the genes encoding SDH subunits. The levels of transcription of Sdh1-1, Sdh1-2, Sdh2-1, Sdh2-2 and Sdh2-3 and the intensity of methylation of their promoters have been determined. In the course of seed germination, the level of methylation of the promoters of one gene encoding subunit A (Sdh1-1) and of two genes encoding subunit B (Sdh2-1 and Sdh2-2) changed from low to the highest, which resulted in suppression of their transcription during the period when the intensity of the glyoxylate cycle was decreasing, while methylation of the promoter of Sdh2-3 did not change and expression of this gene was constitutive during germination. Methylation of the promoter of Sdh1-2 increased but less sharply as compared to Sdh1-1. It is suggested that epigenetic mechanisms of SDH expression via methylation of promoters play an important role in the regulation of transcription of Sdh1-1, Sdh2-1 and Sdh2-2 in maize seeds during germination. These genes may play a role in the provision of operation of the glyoxylate cycle, while Sdh1-2 and Sdh2-3 are involved mainly in the respiratory processes that are not connected with utilization of succinate formed in the glyoxylate cycle.</description><subject>CpG island</subject><subject>CpG Islands - genetics</subject><subject>DNA Methylation</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Plant</subject><subject>Germination</subject><subject>Isoenzymes</subject><subject>Isozymes</subject><subject>Oxidation-Reduction</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Promoter methylation</subject><subject>Promoter Regions, Genetic - genetics</subject><subject>Seeds - enzymology</subject><subject>Seeds - genetics</subject><subject>Succinate dehydrogenase</subject><subject>Succinate Dehydrogenase - genetics</subject><subject>Succinate Dehydrogenase - metabolism</subject><subject>Zea mays</subject><subject>Zea mays - enzymology</subject><subject>Zea mays - genetics</subject><issn>0176-1617</issn><issn>1618-1328</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><recordid>eNp9UcFu1DAUtBCILgtfgIR85JJgx3WcHDiUqi1IlXqBsxXbL7teJXbwSxDLZ_SLcboLx56exm_Go3lDyHvOSs54_elQHqZh2pdVBiVrSsaaF2TDa94UXFTNS7JhXNVFflAX5A3igWUsG_GaXFRKtly0YkMeb35PCRB9DDT2dAcBkEKw0fmwo7iYJfgZ6RXtgqNfVgou1vrQzUAd7I8uxazpEKgPWZ3GdbVKx87_AYoADqlHmmC3DFnkqDnSEeb9MaOz6bwHn-iU4hhnSPiWvOq7AeHdeW7Jj9ub79dfi_uHu2_XV_eFFbKdCwsNCCeNEwr6VlnFa8G4MWC6XrFLWdnK1FIA7yEH54Y7Jao-h5aMyZYpsSUfT_9m558L4KxHjxaGoQsQF9S8EVLy-jLPLREnqk0RMUGvp-THLh01Z3otQx_0Uxl6LUOzRucysurD2WAxI7j_mn_Xz4TPJwLkmL88JI3W5-OD8wnsrF30zxr8BXhCnuo</recordid><startdate>20161020</startdate><enddate>20161020</enddate><creator>Eprintsev, Alexander T.</creator><creator>Fedorin, Dmitry N.</creator><creator>Karabutova, Lyudmila A.</creator><creator>Igamberdiev, Abir U.</creator><general>Elsevier GmbH</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-7253-607X</orcidid></search><sort><creationdate>20161020</creationdate><title>Expression of genes encoding subunits A and B of succinate dehydrogenase in germinating maize seeds is regulated by methylation of their promoters</title><author>Eprintsev, Alexander T. ; Fedorin, Dmitry N. ; Karabutova, Lyudmila A. ; Igamberdiev, Abir U.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-ce8e3d5bd37ef97c716301bbebaf70452c2b653e1fe0011b1d732f39350059073</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>CpG island</topic><topic>CpG Islands - genetics</topic><topic>DNA Methylation</topic><topic>Gene expression</topic><topic>Gene Expression Regulation, Plant</topic><topic>Germination</topic><topic>Isoenzymes</topic><topic>Isozymes</topic><topic>Oxidation-Reduction</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Promoter methylation</topic><topic>Promoter Regions, Genetic - genetics</topic><topic>Seeds - enzymology</topic><topic>Seeds - genetics</topic><topic>Succinate dehydrogenase</topic><topic>Succinate Dehydrogenase - genetics</topic><topic>Succinate Dehydrogenase - metabolism</topic><topic>Zea mays</topic><topic>Zea mays - enzymology</topic><topic>Zea mays - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Eprintsev, Alexander T.</creatorcontrib><creatorcontrib>Fedorin, Dmitry N.</creatorcontrib><creatorcontrib>Karabutova, Lyudmila A.</creatorcontrib><creatorcontrib>Igamberdiev, Abir U.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of plant physiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Eprintsev, Alexander T.</au><au>Fedorin, Dmitry N.</au><au>Karabutova, Lyudmila A.</au><au>Igamberdiev, Abir U.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Expression of genes encoding subunits A and B of succinate dehydrogenase in germinating maize seeds is regulated by methylation of their promoters</atitle><jtitle>Journal of plant physiology</jtitle><addtitle>J Plant Physiol</addtitle><date>2016-10-20</date><risdate>2016</risdate><volume>205</volume><spage>33</spage><epage>40</epage><pages>33-40</pages><issn>0176-1617</issn><eissn>1618-1328</eissn><abstract>Succinate dehydrogenase (SDH) activity, isoenzyme pattern, and expression of two genes encoding subunit A and of three genes encoding subunit B have been investigated in the scutellum of germinating maize (Zea mays L.) seeds. Four SDH isoforms were detected electrophoretically and by ion-exchange chromatography at the peak of activity of the glyoxylate cycle (on the 4th and 5th day of germination), while in dry seeds and on the 8th and 9th day of germination only two isoforms were present, which can be related to differential expression of the genes encoding SDH subunits. The levels of transcription of Sdh1-1, Sdh1-2, Sdh2-1, Sdh2-2 and Sdh2-3 and the intensity of methylation of their promoters have been determined. In the course of seed germination, the level of methylation of the promoters of one gene encoding subunit A (Sdh1-1) and of two genes encoding subunit B (Sdh2-1 and Sdh2-2) changed from low to the highest, which resulted in suppression of their transcription during the period when the intensity of the glyoxylate cycle was decreasing, while methylation of the promoter of Sdh2-3 did not change and expression of this gene was constitutive during germination. Methylation of the promoter of Sdh1-2 increased but less sharply as compared to Sdh1-1. It is suggested that epigenetic mechanisms of SDH expression via methylation of promoters play an important role in the regulation of transcription of Sdh1-1, Sdh2-1 and Sdh2-2 in maize seeds during germination. These genes may play a role in the provision of operation of the glyoxylate cycle, while Sdh1-2 and Sdh2-3 are involved mainly in the respiratory processes that are not connected with utilization of succinate formed in the glyoxylate cycle.</abstract><cop>Germany</cop><pub>Elsevier GmbH</pub><pmid>27591393</pmid><doi>10.1016/j.jplph.2016.08.008</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-7253-607X</orcidid></addata></record> |
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subjects | CpG island CpG Islands - genetics DNA Methylation Gene expression Gene Expression Regulation, Plant Germination Isoenzymes Isozymes Oxidation-Reduction Plant Proteins - genetics Plant Proteins - metabolism Promoter methylation Promoter Regions, Genetic - genetics Seeds - enzymology Seeds - genetics Succinate dehydrogenase Succinate Dehydrogenase - genetics Succinate Dehydrogenase - metabolism Zea mays Zea mays - enzymology Zea mays - genetics |
title | Expression of genes encoding subunits A and B of succinate dehydrogenase in germinating maize seeds is regulated by methylation of their promoters |
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